{
    "type": "genome",
    "identifier": "GCF_014652055.1",
    "organism": "Oceanisphaera arctica",
    "title": "Oceanisphaera arctica",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_014652055.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMD00245597",
        "wgs_master": "BMYB00000000.1",
        "refseq_category": "na",
        "taxid": "641510",
        "species_taxid": "641510",
        "organism_name": "Oceanisphaera arctica",
        "infraspecific_name": "strain=KCTC 23013",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/09/12",
        "asm_name": "ASM1465205v1",
        "asm_submitter": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)",
        "gbrs_paired_asm": "GCA_014652055.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/652/055/GCF_014652055.1_ASM1465205v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3551707",
        "genome_size_ungapped": "3551588",
        "gc_percent": "57.500000",
        "replicon_count": "0",
        "scaffold_count": "47",
        "contig_count": "47",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_014652055.1-RS_2024_09_02",
        "annotation_date": "2024-09-02",
        "total_gene_count": "3347",
        "protein_coding_gene_count": "3210",
        "non_coding_gene_count": "91",
        "pubmed_id": "30832757"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-09-12",
    "dateModified": "2020-09-12",
    "datePublished": "2020-09-12",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Oceanisphaera arctica"
        ],
        "sample_taxid": [
            "641510"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "not applicable"
        ],
        "sample_host_location_id": [],
        "data_size": "1.006 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 93.75,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3551707",
        "Number of Sequences": "47",
        "Longest Sequences (bp)": "264172",
        "N50 (bp)": "152407",
        "Gap Ratio (%)": "0.003351",
        "GCcontent (%)": "57.6",
        "Number of CDSs": "3275",
        "Average Protein Length": "312.8",
        "Coding Ratio (%)": "86.5",
        "Number of rRNAs": "0",
        "Number of tRNAs": "84",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Oceanisphaera arctica",
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                "accession": "GCA_014652055.1",
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                "species_taxid": 641510,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1158,
                "total_fragments": 1161,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Oceanisphaera arctica",
                "strain": "strain=V1-41",
                "accession": "GCA_002936955.1",
                "taxid": 641510,
                "species_taxid": 641510,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9483,
                "matched_fragments": 1103,
                "total_fragments": 1161,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Oceanisphaera litoralis",
                "strain": "strain=DSM 15406",
                "accession": "GCA_016907015.1",
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                "species_taxid": 225144,
                "relation_to_type": "type",
                "validated": true,
                "ani": 89.8141,
                "matched_fragments": 842,
                "total_fragments": 1161,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Oceanisphaera psychrotolerans",
                "strain": "strain=LAM-WHM-ZC",
                "accession": "GCA_001870485.1",
                "taxid": 1414654,
                "species_taxid": 1414654,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.4629,
                "matched_fragments": 904,
                "total_fragments": 1161,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Zobellella endophytica",
                "strain": "strain=59N8",
                "accession": "GCA_003012775.1",
                "taxid": 2116700,
                "species_taxid": 2116700,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.5402,
                "matched_fragments": 746,
                "total_fragments": 1161,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Zobellella denitrificans",
                "strain": "strain=ZD1",
                "accession": "GCA_002237365.1",
                "taxid": 347534,
                "species_taxid": 347534,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.5078,
                "matched_fragments": 727,
                "total_fragments": 1161,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Oceanisphaera marina",
                "strain": "strain=CGMCC 1.15923",
                "accession": "GCA_014643915.1",
                "taxid": 2017550,
                "species_taxid": 2017550,
                "relation_to_type": "type",
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                "ani": 81.7022,
                "matched_fragments": 691,
                "total_fragments": 1161,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Oceanimonas smirnovii",
                "strain": "strain=ATCC BAA-899",
                "accession": "GCA_000381965.1",
                "taxid": 264574,
                "species_taxid": 264574,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.4207,
                "matched_fragments": 577,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas faucium",
                "strain": "strain=BML-PP048",
                "accession": "GCA_021602585.1",
                "taxid": 2740518,
                "species_taxid": 2740518,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.3937,
                "matched_fragments": 121,
                "total_fragments": 1161,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas faucium",
                "strain": "strain=BML-PP048",
                "accession": "GCA_013373935.1",
                "taxid": 2740518,
                "species_taxid": 2740518,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.3687,
                "matched_fragments": 116,
                "total_fragments": 1161,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas lalucatii",
                "strain": "strain=R1b54",
                "accession": "GCA_018398425.1",
                "taxid": 1424203,
                "species_taxid": 1424203,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.3639,
                "matched_fragments": 145,
                "total_fragments": 1161,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas aromaticivorans",
                "strain": "strain=MAP12",
                "accession": "GCA_019097855.1",
                "taxid": 2849492,
                "species_taxid": 2849492,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.1876,
                "matched_fragments": 119,
                "total_fragments": 1161,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas mangiferae",
                "strain": "strain=DMKU BBB3-04",
                "accession": "GCA_007109405.1",
                "taxid": 2593654,
                "species_taxid": 2593654,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.9234,
                "matched_fragments": 101,
                "total_fragments": 1161,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 93.75,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_002936955.1",
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                "matched_fragments": 1103,
                "total_fragments": 1161,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Aeromonadaceae;g__Oceanisphaera",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.99",
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            },
            {
                "accession": "GCF_016907015.1",
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_018222825.1",
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                "matched_fragments": 685,
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Aeromonadaceae;g__Oceanisphaera",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_016746085.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Aeromonadaceae;g__CGMCC-1-18722",
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                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_003012775.1",
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            },
            {
                "accession": "GCF_002237365.1",
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            },
            {
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                "mean_intra_species_ani": "N/A",
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.26,
        "cell_length": -0.26,
        "doubling_h": null,
        "growth_tmp": 29.666,
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        "genome_size": 3541369.0,
        "gc_content": 57.566,
        "coding_genes": 2894.0,
        "rRNA16S_genes": 8.0,
        "tRNA_genes": 91.0,
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        "range_salinity": null,
        "facultative_respiration": 0.0,
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        "bacillus_cell_shape": 0.0,
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        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
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    "_genome_taxon": [
        "Oceanisphaera",
        "arctica"
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    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}