{ "type": "genome", "identifier": "GCF_014652135.1", "organism": "Mongoliitalea lutea", "title": "Mongoliitalea lutea", "description": "na", "data type": "Genome sequencing and assembly", "organization": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014652135.1", "bioproject": "PRJNA224116", "biosample": "SAMD00245602", "wgs_master": "BMYF00000000.1", "refseq_category": "reference genome", "taxid": "849756", "species_taxid": "849756", "organism_name": "Mongoliitalea lutea", "infraspecific_name": "strain=KCTC 23224", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/09/12", "asm_name": "ASM1465213v1", "asm_submitter": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "gbrs_paired_asm": "GCA_014652135.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/652/135/GCF_014652135.1_ASM1465213v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4476218", "genome_size_ungapped": "4476218", "gc_percent": "39.500000", "replicon_count": "0", "scaffold_count": "67", "contig_count": "67", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014652135.1-RS_2024_09_02", "annotation_date": "2024-09-02", "total_gene_count": "3903", "protein_coding_gene_count": "3829", "non_coding_gene_count": "53", "pubmed_id": "30832757" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-09-12", "dateModified": "2020-09-12", "datePublished": "2020-09-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Mongoliitalea lutea" ], "sample_taxid": [ "849756" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "1.270 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4476218", "Number of Sequences": "67", "Longest Sequences (bp)": "396483", "N50 (bp)": "172764", "Gap Ratio (%)": "0.000447", "GCcontent (%)": "39.6", "Number of CDSs": "3794", "Average Protein Length": "343.6", "Coding Ratio (%)": "87.4", "Number of rRNAs": "0", "Number of tRNAs": "41", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Mongoliitalea lutea", "strain": "strain=KCTC 23224", "accession": "GCA_014652135.1", "taxid": 849756, "species_taxid": 849756, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1463, "total_fragments": 1464, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Mongoliitalea daihaiensis", "strain": "strain=X100-76", "accession": "GCA_021596945.1", "taxid": 2782006, "species_taxid": 2782006, "relation_to_type": "type", "validated": true, "ani": 83.9264, "matched_fragments": 909, "total_fragments": 1464, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cecembia rubra", "strain": "strain=DSM 28057", "accession": "GCA_003014575.1", "taxid": 1485585, "species_taxid": 1485585, "relation_to_type": "type", "validated": true, "ani": 77.9023, "matched_fragments": 241, "total_fragments": 1464, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Belliella baltica", "strain": "strain=DSM 15883", "accession": "GCA_000265405.1", "taxid": 232259, "species_taxid": 232259, "relation_to_type": "type", "validated": true, "ani": 77.6762, "matched_fragments": 184, "total_fragments": 1464, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Belliella aquatica", "strain": "strain=JCM 19468", "accession": "GCA_022549755.1", "taxid": 1323734, "species_taxid": 1323734, "relation_to_type": "type", "validated": true, "ani": 77.3921, "matched_fragments": 196, "total_fragments": 1464, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Belliella aquatica", "strain": "strain=CGMCC 1.12479", "accession": "GCA_014637795.1", "taxid": 1323734, "species_taxid": 1323734, "relation_to_type": "type", "validated": true, "ani": 77.2615, "matched_fragments": 193, "total_fragments": 1464, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algoriphagus terrigena", "strain": "strain=DSM 22685", "accession": "GCA_000429445.1", "taxid": 344884, "species_taxid": 344884, "relation_to_type": "type", "validated": true, "ani": 77.1413, "matched_fragments": 70, "total_fragments": 1464, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquiflexum balticum", "strain": "strain=DSM 16537", "accession": "GCA_900176595.1", "taxid": 280473, "species_taxid": 280473, "relation_to_type": "type", "validated": true, "ani": 77.057, "matched_fragments": 192, "total_fragments": 1464, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algoriphagus mannitolivorans", "strain": "strain=DSM 15301", "accession": "GCA_000429425.1", "taxid": 226504, "species_taxid": 226504, "relation_to_type": "type", "validated": true, "ani": 77.0178, "matched_fragments": 106, "total_fragments": 1464, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algoriphagus boseongensis", "strain": "strain=CECT 8446", "accession": "GCA_004362805.1", "taxid": 1442587, "species_taxid": 1442587, "relation_to_type": "type", "validated": true, "ani": 76.9208, "matched_fragments": 123, "total_fragments": 1464, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algoriphagus algorifonticola", "strain": "strain=hg1", "accession": "GCA_007655305.1", "taxid": 2593007, "species_taxid": 2593007, "relation_to_type": "type", "validated": true, "ani": 76.7991, "matched_fragments": 136, "total_fragments": 1464, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algoriphagus pacificus", "strain": "strain=YJ13C", "accession": "GCA_017254845.1", "taxid": 2811234, "species_taxid": 2811234, "relation_to_type": "type", "validated": true, "ani": 76.7464, "matched_fragments": 110, "total_fragments": 1464, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algoriphagus lacus", "strain": "strain=N3", "accession": "GCA_003583985.1", "taxid": 2056311, "species_taxid": 2056311, "relation_to_type": "type", "validated": true, "ani": 76.7365, "matched_fragments": 81, "total_fragments": 1464, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algoriphagus chordae", "strain": "strain=DSM 19830", "accession": "GCA_003254055.1", "taxid": 237019, "species_taxid": 237019, "relation_to_type": "type", "validated": true, "ani": 76.7188, "matched_fragments": 85, "total_fragments": 1464, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquiflexum lacus", "strain": "strain=CUG 91378", "accession": "GCA_015476655.1", "taxid": 2483805, "species_taxid": 2483805, "relation_to_type": "type", "validated": true, "ani": 76.5314, "matched_fragments": 191, "total_fragments": 1464, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquiflexum aquatile", "strain": "strain=Z0201", "accession": "GCA_003316845.1", "taxid": 2249427, "species_taxid": 2249427, "relation_to_type": "type", "validated": true, "ani": 76.46, "matched_fragments": 171, "total_fragments": 1464, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_014652135.1", "gtdb_species": "s__Mongoliitalea lutea", "ani": 100.0, "matched_fragments": 1463, "total_fragments": 1464, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__Mongoliitalea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_000298295.1", "gtdb_species": "s__Cecembia lonarensis", "ani": 79.0086, "matched_fragments": 264, "total_fragments": 1464, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__Cecembia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_007126775.1", "gtdb_species": "s__Cecembia sp007126775", "ani": 78.6778, "matched_fragments": 194, "total_fragments": 1464, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__Cecembia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.59", "min_intra_species_ani": "99.59", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.88", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_004216715.1", "gtdb_species": "s__Cecembia calidifontis", "ani": 78.5105, "matched_fragments": 232, "total_fragments": 1464, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__Cecembia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900156785.1", "gtdb_species": "s__Belliella pelovolcani", "ani": 78.3183, "matched_fragments": 205, "total_fragments": 1464, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__Belliella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000265405.1", "gtdb_species": "s__Belliella baltica", "ani": 77.6762, "matched_fragments": 184, "total_fragments": 1464, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__Belliella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000295935.2", "gtdb_species": "s__Indibacter alkaliphilus", "ani": 77.6453, "matched_fragments": 214, "total_fragments": 1464, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__Indibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014637795.1", "gtdb_species": "s__Belliella aquatica", "ani": 77.2474, "matched_fragments": 194, "total_fragments": 1464, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__Belliella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000429445.1", "gtdb_species": "s__Algoriphagus terrigena", "ani": 77.1051, "matched_fragments": 71, "total_fragments": 1464, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__Algoriphagus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900176595.1", "gtdb_species": "s__Aquiflexum balticum", "ani": 77.0312, "matched_fragments": 194, "total_fragments": 1464, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__Aquiflexum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000429425.1", "gtdb_species": "s__Algoriphagus mannitolivorans", "ani": 77.0178, "matched_fragments": 106, "total_fragments": 1464, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__Algoriphagus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004362805.1", "gtdb_species": "s__Algoriphagus boseongensis", "ani": 76.921, "matched_fragments": 122, "total_fragments": 1464, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__Algoriphagus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003003005.1", "gtdb_species": "s__Mongoliibacter ruber", "ani": 76.9144, "matched_fragments": 216, "total_fragments": 1464, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__Mongoliibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_007655305.1", "gtdb_species": "s__Algoriphagus sp007655305", "ani": 76.7991, "matched_fragments": 136, "total_fragments": 1464, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__Algoriphagus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003797895.1", "gtdb_species": "s__Cecembia sp003797895", "ani": 76.7955, "matched_fragments": 197, "total_fragments": 1464, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__Cecembia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_017254845.1", "gtdb_species": "s__Algoriphagus sp017254845", "ani": 76.7477, "matched_fragments": 111, "total_fragments": 1464, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__Algoriphagus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003254055.1", "gtdb_species": "s__Algoriphagus chordae", "ani": 76.7188, "matched_fragments": 85, "total_fragments": 1464, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__Algoriphagus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_015476655.1", "gtdb_species": "s__Aquiflexum lacus", "ani": 76.5212, "matched_fragments": 192, "total_fragments": 1464, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__Aquiflexum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900112005.1", "gtdb_species": "s__Algoriphagus aquimarinus", "ani": 76.4701, "matched_fragments": 78, "total_fragments": 1464, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__Algoriphagus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003316845.1", "gtdb_species": "s__Aquiflexum_A aquatile", "ani": 76.4594, "matched_fragments": 171, "total_fragments": 1464, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__Aquiflexum_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.302, "cell_length": 0.477, "doubling_h": null, "growth_tmp": null, "optimum_tmp": 33.0, "optimum_ph": 9.0, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Mongoliitalea", "lutea" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }