{ "type": "genome", "identifier": "GCF_014652175.1", "organism": "Providencia stuartii", "title": "Providencia stuartii", "description": "na", "data type": "Genome sequencing and assembly", "organization": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014652175.1", "bioproject": "PRJNA224116", "biosample": "SAMD00245604", "wgs_master": "BMYH00000000.1", "refseq_category": "na", "taxid": "588", "species_taxid": "588", "organism_name": "Providencia stuartii", "infraspecific_name": "strain=KCTC 23281", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/09/12", "asm_name": "ASM1465217v1", "asm_submitter": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "gbrs_paired_asm": "GCA_014652175.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/652/175/GCF_014652175.1_ASM1465217v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from synonym type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4342585", "genome_size_ungapped": "4340504", "gc_percent": "41.000000", "replicon_count": "0", "scaffold_count": "39", "contig_count": "39", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-03-03", "total_gene_count": "4138", "protein_coding_gene_count": "3915", "non_coding_gene_count": "79", "pubmed_id": "30832757" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-09-12", "dateModified": "2020-09-12", "datePublished": "2020-09-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Providencia stuartii" ], "sample_taxid": [ "588" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "1.236 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 97.92, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4342585", "Number of Sequences": "39", "Longest Sequences (bp)": "1224544", "N50 (bp)": "484316", "Gap Ratio (%)": "0.047921", "GCcontent (%)": "41.2", "Number of CDSs": "4043", "Average Protein Length": "298.1", "Coding Ratio (%)": "83.3", "Number of rRNAs": "0", "Number of tRNAs": "69", "Number of CRISPRs": "6" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Providencia thailandensis", "strain": "strain=KCTC 23281", "accession": "GCA_014652175.1", "taxid": 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Xenorhabdus lircayensis", "strain": "strain=VLS", "accession": "GCA_016306625.1", "taxid": 2763499, "species_taxid": 2763499, "relation_to_type": "type", "validated": true, "ani": 78.4753, "matched_fragments": 182, "total_fragments": 1431, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Photorhabdus temperata", "strain": "strain=DSM 14550", "accession": "GCA_025384845.1", "taxid": 574560, "species_taxid": 574560, "relation_to_type": "type", "validated": true, "ani": 78.1782, "matched_fragments": 182, "total_fragments": 1431, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Photorhabdus hindustanensis", "strain": "strain=H1", "accession": "GCA_002968995.1", "taxid": 2918802, "species_taxid": 2918802, "relation_to_type": "type", "validated": true, "ani": 78.133, "matched_fragments": 184, "total_fragments": 1431, "ani_threshold": 95, "status": "below_threshold" }, { 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