{ "type": "genome", "identifier": "GCF_014652215.1", "organism": "Gemmobacter tilapiae", "title": "Gemmobacter tilapiae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014652215.1", "bioproject": "PRJNA224116", "biosample": "SAMD00245607", "wgs_master": "BMYJ00000000.1", "refseq_category": "reference genome", "taxid": "875041", "species_taxid": "875041", "organism_name": "Gemmobacter tilapiae", "infraspecific_name": "strain=KCTC 23310", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/09/12", "asm_name": "ASM1465221v1", "asm_submitter": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "gbrs_paired_asm": "GCA_014652215.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/652/215/GCF_014652215.1_ASM1465221v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3623543", "genome_size_ungapped": "3623243", "gc_percent": "61.500000", "replicon_count": "0", "scaffold_count": "27", "contig_count": "27", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014652215.1-RS_2024_09_02", "annotation_date": "2024-09-02", "total_gene_count": "3644", "protein_coding_gene_count": "3559", "non_coding_gene_count": "49", "pubmed_id": "30832757" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-09-12", "dateModified": "2020-09-12", "datePublished": "2020-09-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Gemmobacter tilapiae" ], "sample_taxid": [ "875041" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "1.004 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3623543", "Number of Sequences": "27", "Longest Sequences (bp)": "594733", "N50 (bp)": "354348", "Gap Ratio (%)": "0.008279", "GCcontent (%)": "61.5", "Number of CDSs": "3589", "Average Protein Length": "309.0", "Coding Ratio (%)": "91.8", "Number of rRNAs": "3", "Number of tRNAs": "43", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Gemmobacter tilapiae", "strain": "strain=KCTC 23310", "accession": "GCA_014652215.1", "taxid": 875041, "species_taxid": 875041, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1194, "total_fragments": 1195, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Gemmobacter fulva", "strain": "strain=con5", "accession": "GCA_018798885.1", "taxid": 2840474, "species_taxid": 2840474, "relation_to_type": "type", "validated": true, "ani": 78.4408, "matched_fragments": 473, "total_fragments": 1195, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gemmobacter caeruleus", "strain": "strain=N8", "accession": "GCA_008271655.1", "taxid": 2595004, "species_taxid": 2595004, "relation_to_type": "type", "validated": true, "ani": 78.3249, "matched_fragments": 472, "total_fragments": 1195, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodobacter amnigenus", "strain": "strain=HSP-20", "accession": "GCA_019130055.1", "taxid": 2852097, "species_taxid": 2852097, "relation_to_type": "type", "validated": true, "ani": 78.1536, 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95, "status": "below_threshold" }, { "organism_name": "Gemmobacter lutimaris", "strain": "strain=YJ-T1-11", "accession": "GCA_003570715.1", "taxid": 2306023, "species_taxid": 2306023, "relation_to_type": "type", "validated": true, "ani": 77.8675, "matched_fragments": 430, "total_fragments": 1195, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gemmobacter caeni", "strain": "strain=CGMCC 1.7745", "accession": "GCA_007830625.1", "taxid": 589035, "species_taxid": 589035, "relation_to_type": "type", "validated": true, "ani": 77.8563, "matched_fragments": 416, "total_fragments": 1195, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tabrizicola sediminis", "strain": "strain=DRYC-M-16", "accession": "GCA_004745575.1", "taxid": 2486418, "species_taxid": 2486418, "relation_to_type": "type", "validated": true, "ani": 77.8465, "matched_fragments": 395, "total_fragments": 1195, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tabrizicola algicola", "strain": "strain=ETT8", "accession": "GCA_010915705.1", "taxid": 2709381, "species_taxid": 2709381, "relation_to_type": "type", "validated": true, "ani": 77.8208, "matched_fragments": 380, "total_fragments": 1195, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gemmobacter serpentinus", "strain": "strain=HB-1", "accession": "GCA_008973825.1", "taxid": 2652247, "species_taxid": 2652247, "relation_to_type": "type", "validated": true, "ani": 77.8077, "matched_fragments": 385, "total_fragments": 1195, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gemmobacter caeni", "strain": "strain=DSM 21823", "accession": "GCA_003054195.1", "taxid": 589035, "species_taxid": 589035, "relation_to_type": "type", "validated": true, "ani": 77.775, "matched_fragments": 426, "total_fragments": 1195, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gemmobacter aquaticus", "strain": "strain=A1-9", "accession": "GCA_007859075.1", "taxid": 490185, "species_taxid": 490185, "relation_to_type": "type", "validated": true, "ani": 77.7207, "matched_fragments": 329, "total_fragments": 1195, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodobacter thermarum", "strain": "strain=YIM 73036", "accession": "GCA_003574395.1", "taxid": 2670345, "species_taxid": 2670345, "relation_to_type": "type", "validated": true, "ani": 77.7153, "matched_fragments": 376, "total_fragments": 1195, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gemmobacter aquaticus", "strain": "strain=CGMCC 1.7029", "accession": "GCA_014645295.1", "taxid": 490185, "species_taxid": 490185, "relation_to_type": "type", "validated": true, "ani": 77.6328, "matched_fragments": 329, "total_fragments": 1195, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gemmobacter nectariphilus", "strain": "strain=DSM 15620", "accession": "GCA_000429765.1", "taxid": 220343, "species_taxid": 220343, "relation_to_type": "type", "validated": true, "ani": 77.5428, "matched_fragments": 362, "total_fragments": 1195, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Frigidibacter albus", "strain": "strain=SP32", "accession": "GCA_009881095.1", "taxid": 1465486, "species_taxid": 1465486, "relation_to_type": "type", "validated": true, "ani": 77.5043, "matched_fragments": 330, "total_fragments": 1195, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cereibacter changlensis", "strain": "strain=DSM 18774", "accession": "GCA_003254335.1", "taxid": 402884, "species_taxid": 402884, "relation_to_type": "type", "validated": true, "ani": 77.3357, "matched_fragments": 375, "total_fragments": 1195, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseicitreum antarcticum", "strain": "strain=ZS2-28", "accession": "GCA_014681765.1", "taxid": 564137, "species_taxid": 564137, "relation_to_type": "type", "validated": true, "ani": 76.9763, "matched_fragments": 221, "total_fragments": 1195, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseicitreum antarcticum", "strain": "strain=CGMCC 1.8894", "accession": "GCA_900107025.1", "taxid": 564137, "species_taxid": 564137, "relation_to_type": "type", "validated": true, "ani": 76.9475, "matched_fragments": 224, "total_fragments": 1195, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudorhodobacter turbinis", "strain": "strain=S12M18", "accession": "GCA_005234135.1", "taxid": 2500533, "species_taxid": 2500533, "relation_to_type": "type", "validated": true, "ani": 76.8204, "matched_fragments": 201, "total_fragments": 1195, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_014652215.1", "gtdb_species": "s__Gemmobacter_C tilapiae", "ani": 100.0, "matched_fragments": 1194, "total_fragments": 1195, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Gemmobacter_C", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_008271655.1", "gtdb_species": "s__Gemmobacter caeruleus", "ani": 78.3245, "matched_fragments": 472, "total_fragments": 1195, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Gemmobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016765795.1", "gtdb_species": "s__UBA1943 sp016765795", "ani": 78.308, "matched_fragments": 418, "total_fragments": 1195, 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