{
    "type": "genome",
    "identifier": "GCF_014652275.1",
    "organism": "Halioglobus pacificus",
    "title": "Halioglobus pacificus",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_014652275.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMD00245610",
        "wgs_master": "BMYM00000000.1",
        "refseq_category": "reference genome",
        "taxid": "930806",
        "species_taxid": "930806",
        "organism_name": "Halioglobus pacificus",
        "infraspecific_name": "strain=KCTC 23430",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/09/12",
        "asm_name": "ASM1465227v1",
        "asm_submitter": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)",
        "gbrs_paired_asm": "GCA_014652275.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/652/275/GCF_014652275.1_ASM1465227v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3418305",
        "genome_size_ungapped": "3418305",
        "gc_percent": "57.500000",
        "replicon_count": "0",
        "scaffold_count": "8",
        "contig_count": "8",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_014652275.1-RS_2024_09_02",
        "annotation_date": "2024-09-02",
        "total_gene_count": "3137",
        "protein_coding_gene_count": "3081",
        "non_coding_gene_count": "45",
        "pubmed_id": "30832757"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-09-12",
    "dateModified": "2020-09-12",
    "datePublished": "2020-09-12",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Halioglobus pacificus"
        ],
        "sample_taxid": [
            "930806"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "not applicable"
        ],
        "sample_host_location_id": [],
        "data_size": "0.975 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3418305",
        "Number of Sequences": "8",
        "Longest Sequences (bp)": "1938067",
        "N50 (bp)": "1938067",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "57.3",
        "Number of CDSs": "3122",
        "Average Protein Length": "330.9",
        "Coding Ratio (%)": "90.7",
        "Number of rRNAs": "2",
        "Number of tRNAs": "39",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Halioglobus pacificus",
                "strain": "strain=KCTC 23430",
                "accession": "GCA_014652275.1",
                "taxid": 930806,
                "species_taxid": 930806,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1136,
                "total_fragments": 1136,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Halioglobus japonicus",
                "strain": "strain=KCTC 23429",
                "accession": "GCA_014652255.1",
                "taxid": 930805,
                "species_taxid": 930805,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8159,
                "matched_fragments": 169,
                "total_fragments": 1136,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halioglobus japonicus",
                "strain": "strain=S1-36",
                "accession": "GCA_002869505.1",
                "taxid": 930805,
                "species_taxid": 930805,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8061,
                "matched_fragments": 168,
                "total_fragments": 1136,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halioglobus japonicus",
                "strain": "strain=NBRC 107739",
                "accession": "GCA_001983995.1",
                "taxid": 930805,
                "species_taxid": 930805,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.806,
                "matched_fragments": 171,
                "total_fragments": 1136,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Parahaliea aestuarii",
                "strain": "strain=S2-26",
                "accession": "GCA_008064635.1",
                "taxid": 1852021,
                "species_taxid": 1852021,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.1712,
                "matched_fragments": 193,
                "total_fragments": 1136,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Seongchinamella sediminis",
                "strain": "strain=U0301",
                "accession": "GCA_003457605.1",
                "taxid": 2283635,
                "species_taxid": 2283635,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.1003,
                "matched_fragments": 178,
                "total_fragments": 1136,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Parahaliea maris",
                "strain": "strain=HSLHS9",
                "accession": "GCA_008064665.1",
                "taxid": 2716870,
                "species_taxid": 2716870,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.984,
                "matched_fragments": 184,
                "total_fragments": 1136,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Parahaliea mediterranea",
                "strain": "strain=DSM 21924",
                "accession": "GCA_003402235.1",
                "taxid": 651086,
                "species_taxid": 651086,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9731,
                "matched_fragments": 222,
                "total_fragments": 1136,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Haliea salexigens",
                "strain": "strain=DSM 19537",
                "accession": "GCA_000423125.1",
                "taxid": 287487,
                "species_taxid": 287487,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9206,
                "matched_fragments": 135,
                "total_fragments": 1136,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Haliea alexandrii",
                "strain": "strain=LZ-16-2",
                "accession": "GCA_003719295.1",
                "taxid": 2448162,
                "species_taxid": 2448162,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9004,
                "matched_fragments": 134,
                "total_fragments": 1136,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Kineobactrum sediminis",
                "strain": "strain=F02",
                "accession": "GCA_002868715.1",
                "taxid": 1905677,
                "species_taxid": 1905677,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.4651,
                "matched_fragments": 95,
                "total_fragments": 1136,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halomonas sulfidoxydans",
                "strain": "strain=MCCC 1A11059",
                "accession": "GCA_017868775.1",
                "taxid": 2733484,
                "species_taxid": 2733484,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.8092,
                "matched_fragments": 59,
                "total_fragments": 1136,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas cavernae",
                "strain": "strain=K2W31S-8",
                "accession": "GCA_003595175.1",
                "taxid": 2320867,
                "species_taxid": 2320867,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.5364,
                "matched_fragments": 51,
                "total_fragments": 1136,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_014652275.1",
                "gtdb_species": "s__Halioglobus_A pacificus",
                "ani": 100.0,
                "matched_fragments": 1136,
                "total_fragments": 1136,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halieaceae;g__Halioglobus_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.67",
                "min_intra_species_ani": "98.67",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.96",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCF_001983995.1",
                "gtdb_species": "s__Halioglobus japonicus",
                "ani": 77.806,
                "matched_fragments": 171,
                "total_fragments": 1136,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halieaceae;g__Halioglobus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.41",
                "min_intra_species_ani": "98.25",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_004745945.1",
                "gtdb_species": "s__Halioglobus sp004745945",
                "ani": 77.2538,
                "matched_fragments": 144,
                "total_fragments": 1136,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halieaceae;g__Halioglobus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_017255185.1",
                "gtdb_species": "s__Parahaliea mediterranea_A",
                "ani": 77.2443,
                "matched_fragments": 192,
                "total_fragments": 1136,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halieaceae;g__Parahaliea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_008064635.1",
                "gtdb_species": "s__Parahaliea aestuarii",
                "ani": 77.1712,
                "matched_fragments": 193,
                "total_fragments": 1136,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halieaceae;g__Parahaliea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003457605.1",
                "gtdb_species": "s__Halioglobus sediminis",
                "ani": 77.1003,
                "matched_fragments": 178,
                "total_fragments": 1136,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halieaceae;g__Halioglobus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_008370495.1",
                "gtdb_species": "s__Halioglobus sp008370495",
                "ani": 77.0519,
                "matched_fragments": 142,
                "total_fragments": 1136,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halieaceae;g__Halioglobus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003402235.1",
                "gtdb_species": "s__Parahaliea mediterranea",
                "ani": 76.9849,
                "matched_fragments": 221,
                "total_fragments": 1136,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halieaceae;g__Parahaliea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_008064665.1",
                "gtdb_species": "s__Parahaliea maris",
                "ani": 76.984,
                "matched_fragments": 184,
                "total_fragments": 1136,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halieaceae;g__Parahaliea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003719295.1",
                "gtdb_species": "s__Haliea alexandrii",
                "ani": 76.9004,
                "matched_fragments": 134,
                "total_fragments": 1136,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halieaceae;g__Haliea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_009937575.1",
                "gtdb_species": "s__Halioglobus sp009937575",
                "ani": 76.8789,
                "matched_fragments": 146,
                "total_fragments": 1136,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halieaceae;g__Halioglobus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004340525.1",
                "gtdb_species": "s__Chromatocurvus halotolerans",
                "ani": 76.7014,
                "matched_fragments": 97,
                "total_fragments": 1136,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halieaceae;g__Chromatocurvus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.98",
                "min_intra_species_ani": "99.98",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_002868715.1",
                "gtdb_species": "s__Kineobactrum sediminis",
                "ani": 76.4646,
                "matched_fragments": 94,
                "total_fragments": 1136,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halieaceae;g__Kineobactrum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003646405.1",
                "gtdb_species": "s__Halioglobus sp003646405",
                "ani": 76.1059,
                "matched_fragments": 83,
                "total_fragments": 1136,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halieaceae;g__Halioglobus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.398,
        "cell_length": -0.398,
        "doubling_h": null,
        "growth_tmp": 25.0,
        "optimum_tmp": 22.5,
        "optimum_ph": 7.5,
        "genome_size": 5003572.5,
        "gc_content": 57.366,
        "coding_genes": 4263.0,
        "rRNA16S_genes": 2.0,
        "tRNA_genes": 42.0,
        "gram_stain": null,
        "sporulation": null,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 1.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Halioglobus",
        "pacificus"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}