{
    "type": "genome",
    "identifier": "GCF_014652335.1",
    "organism": "Vogesella fluminis",
    "title": "Vogesella fluminis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_014652335.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMD00245613",
        "wgs_master": "BMYP00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1069161",
        "species_taxid": "1069161",
        "organism_name": "Vogesella fluminis",
        "infraspecific_name": "strain=KCTC 23713",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/09/12",
        "asm_name": "ASM1465233v1",
        "asm_submitter": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)",
        "gbrs_paired_asm": "GCA_014652335.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/652/335/GCF_014652335.1_ASM1465233v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3300252",
        "genome_size_ungapped": "3300252",
        "gc_percent": "63.500000",
        "replicon_count": "0",
        "scaffold_count": "124",
        "contig_count": "124",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_014652335.1-RS_2024_09_02",
        "annotation_date": "2024-09-02",
        "total_gene_count": "3164",
        "protein_coding_gene_count": "3056",
        "non_coding_gene_count": "70",
        "pubmed_id": "30832757"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-09-12",
    "dateModified": "2020-09-12",
    "datePublished": "2020-09-12",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Vogesella fluminis"
        ],
        "sample_taxid": [
            "1069161"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "not applicable"
        ],
        "sample_host_location_id": [],
        "data_size": "0.913 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 98.96,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3300252",
        "Number of Sequences": "124",
        "Longest Sequences (bp)": "187708",
        "N50 (bp)": "84010",
        "Gap Ratio (%)": "0.000606",
        "GCcontent (%)": "63.5",
        "Number of CDSs": "3017",
        "Average Protein Length": "318.9",
        "Coding Ratio (%)": "87.5",
        "Number of rRNAs": "1",
        "Number of tRNAs": "67",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Vogesella fluminis",
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                "species_taxid": 1069161,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 1039,
                "total_fragments": 1042,
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                "status": "conclusive"
            },
            {
                "organism_name": "Vogesella alkaliphila",
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                "accession": "GCA_014652475.1",
                "taxid": 1193621,
                "species_taxid": 1193621,
                "relation_to_type": "type",
                "validated": true,
                "ani": 93.9375,
                "matched_fragments": 860,
                "total_fragments": 1042,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Vogesella indigofera",
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                "accession": "GCA_003633895.1",
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                "species_taxid": 45465,
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                "ani": 93.2004,
                "matched_fragments": 863,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Vogesella urethralis",
                "strain": "strain=YM-1",
                "accession": "GCA_007644045.2",
                "taxid": 2592656,
                "species_taxid": 2592656,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.3162,
                "matched_fragments": 689,
                "total_fragments": 1042,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Vogesella mureinivorans",
                "strain": "strain=389",
                "accession": "GCA_007644035.2",
                "taxid": 657276,
                "species_taxid": 657276,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.0838,
                "matched_fragments": 662,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Crenobacter luteus",
                "strain": "strain=DSM 27258",
                "accession": "GCA_004345725.1",
                "taxid": 1452487,
                "species_taxid": 1452487,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.2413,
                "matched_fragments": 528,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Chromobacterium piscinae",
                "strain": "strain=DSM 23278",
                "accession": "GCA_021129175.1",
                "taxid": 686831,
                "species_taxid": 686831,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.0226,
                "matched_fragments": 566,
                "total_fragments": 1042,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Chromobacterium sinusclupearum",
                "strain": "strain=MWU13-2610",
                "accession": "GCA_002902845.1",
                "taxid": 2077146,
                "species_taxid": 2077146,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.9482,
                "matched_fragments": 525,
                "total_fragments": 1042,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Chromobacterium aquaticum",
                "strain": "strain=DSM 19852",
                "accession": "GCA_021129195.1",
                "taxid": 467180,
                "species_taxid": 467180,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.8983,
                "matched_fragments": 554,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Chromobacterium alticapitis",
                "strain": "strain=MWU14-2602",
                "accession": "GCA_002924365.1",
                "taxid": 2073169,
                "species_taxid": 2073169,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.7521,
                "matched_fragments": 522,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Crenobacter cavernae",
                "strain": "strain=K1W11S-77",
                "accession": "GCA_003355495.1",
                "taxid": 2290923,
                "species_taxid": 2290923,
                "relation_to_type": "type",
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                "ani": 80.5367,
                "matched_fragments": 519,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Burkholderia perseverans",
                "strain": "strain=INN12",
                "accession": "GCA_022870505.1",
                "taxid": 2615214,
                "species_taxid": 2615214,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9565,
                "matched_fragments": 291,
                "total_fragments": 1042,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.0,
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                "accession": "GCF_014652335.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Chromobacteriaceae;g__Vogesella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
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                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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            },
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                "mean_intra_species_ani": "97.25",
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                "mean_intra_species_ani": "N/A",
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            },
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                "accession": "GCF_902829295.1",
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                "mean_intra_species_ani": "N/A",
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    "_bac2feature": {
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    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}