{ "type": "genome", "identifier": "GCF_014652375.1", "organism": "Alishewanella tabrizica", "title": "Alishewanella tabrizica", "description": "na", "data type": "Genome sequencing and assembly", "organization": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014652375.1", "bioproject": "PRJNA224116", "biosample": "SAMD00245615", "wgs_master": "BMYR00000000.1", "refseq_category": "reference genome", "taxid": "671278", "species_taxid": "671278", "organism_name": "Alishewanella tabrizica", "infraspecific_name": "strain=KCTC 23723", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/09/12", "asm_name": "ASM1465237v1", "asm_submitter": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "gbrs_paired_asm": "GCA_014652375.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/652/375/GCF_014652375.1_ASM1465237v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3744405", "genome_size_ungapped": "3744086", "gc_percent": "45.500000", "replicon_count": "0", "scaffold_count": "47", "contig_count": "47", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014652375.1-RS_2024_09_02", "annotation_date": "2024-09-02", "total_gene_count": "3317", "protein_coding_gene_count": "3225", "non_coding_gene_count": "73", "pubmed_id": "30832757" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-09-12", "dateModified": "2020-09-12", "datePublished": "2020-09-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Alishewanella tabrizica" ], "sample_taxid": [ "671278" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "1.065 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3744405", "Number of Sequences": "47", "Longest Sequences (bp)": "516080", "N50 (bp)": "262673", "Gap Ratio (%)": "0.008519", "GCcontent (%)": "45.4", "Number of CDSs": "3235", "Average Protein Length": "343.9", "Coding Ratio (%)": "89.1", "Number of rRNAs": "1", "Number of tRNAs": "63", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Alishewanella tabrizica", "strain": "strain=KCTC 23723", "accession": "GCA_014652375.1", "taxid": 671278, "species_taxid": 671278, 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"below_threshold" }, { "organism_name": "Rheinheimera riviphila", "strain": "strain=KYPC3", "accession": "GCA_004005945.1", "taxid": 1834037, "species_taxid": 1834037, "relation_to_type": "type", "validated": true, "ani": 77.7515, "matched_fragments": 148, "total_fragments": 1227, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella inventionis", "strain": "strain=KCTC 42807", "accession": "GCA_023283595.1", "taxid": 1738770, "species_taxid": 1738770, "relation_to_type": "type", "validated": true, "ani": 75.8692, "matched_fragments": 50, "total_fragments": 1227, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_014652375.1", "gtdb_species": "s__Alishewanella tabrizica", "ani": 100.0, "matched_fragments": 1226, "total_fragments": 1227, "gtdb_taxonomy": 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