{
    "type": "genome",
    "identifier": "GCF_014652395.1",
    "organism": "Advenella faeciporci",
    "title": "Advenella faeciporci",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_014652395.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMD00245616",
        "wgs_master": "BMYS00000000.1",
        "refseq_category": "reference genome",
        "taxid": "797535",
        "species_taxid": "797535",
        "organism_name": "Advenella faeciporci",
        "infraspecific_name": "strain=KCTC 23732",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/09/12",
        "asm_name": "ASM1465239v1",
        "asm_submitter": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)",
        "gbrs_paired_asm": "GCA_014652395.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/652/395/GCF_014652395.1_ASM1465239v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3097412",
        "genome_size_ungapped": "3097412",
        "gc_percent": "50.000000",
        "replicon_count": "0",
        "scaffold_count": "54",
        "contig_count": "54",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_014652395.1-RS_2024_09_02",
        "annotation_date": "2024-09-02",
        "total_gene_count": "2965",
        "protein_coding_gene_count": "2875",
        "non_coding_gene_count": "52",
        "pubmed_id": "30832757"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-09-12",
    "dateModified": "2020-09-12",
    "datePublished": "2020-09-12",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Advenella faeciporci"
        ],
        "sample_taxid": [
            "797535"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "not applicable"
        ],
        "sample_host_location_id": [],
        "data_size": "0.881 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 97.92,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3097412",
        "Number of Sequences": "54",
        "Longest Sequences (bp)": "387610",
        "N50 (bp)": "108584",
        "Gap Ratio (%)": "0.000387",
        "GCcontent (%)": "49.8",
        "Number of CDSs": "2872",
        "Average Protein Length": "321.7",
        "Coding Ratio (%)": "89.5",
        "Number of rRNAs": "1",
        "Number of tRNAs": "43",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Advenella faeciporci",
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                "accession": "GCA_014652395.1",
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                "species_taxid": 797535,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1013,
                "total_fragments": 1015,
                "ani_threshold": 95,
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            },
            {
                "organism_name": "Advenella alkanexedens",
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                "accession": "GCA_019132845.1",
                "taxid": 1481665,
                "species_taxid": 1481665,
                "relation_to_type": "type",
                "validated": true,
                "ani": 90.2609,
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                "total_fragments": 1015,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Advenella mandrilli",
                "strain": "strain=WQ 585",
                "accession": "GCA_016595155.1",
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                "species_taxid": 2800330,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Eoetvoesia caeni",
                "strain": "strain=PB3-7B",
                "accession": "GCA_022688825.1",
                "taxid": 645616,
                "species_taxid": 645616,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.2355,
                "matched_fragments": 97,
                "total_fragments": 1015,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Advenella mimigardefordensis",
                "strain": "strain=DPN7",
                "accession": "GCA_000521505.1",
                "taxid": 302406,
                "species_taxid": 302406,
                "relation_to_type": "type",
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                "ani": 77.4555,
                "matched_fragments": 188,
                "total_fragments": 1015,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Advenella incenata",
                "strain": "strain=DSM 23814",
                "accession": "GCA_004217095.1",
                "taxid": 267800,
                "species_taxid": 267800,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.1936,
                "matched_fragments": 146,
                "total_fragments": 1015,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Advenella kashmirensis",
                "strain": "strain=WT001",
                "accession": "GCA_000219915.3",
                "taxid": 310575,
                "species_taxid": 310575,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.08,
                "matched_fragments": 173,
                "total_fragments": 1015,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Achromobacter insolitus",
                "strain": "strain=LMG 6003",
                "accession": "GCA_902859615.1",
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                "species_taxid": 217204,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.0645,
                "matched_fragments": 50,
                "total_fragments": 1015,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Achromobacter insolitus",
                "strain": "strain=NCTC13520",
                "accession": "GCA_900637265.1",
                "taxid": 217204,
                "species_taxid": 217204,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.031,
                "matched_fragments": 51,
                "total_fragments": 1015,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 97.92,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_014652395.1",
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                "matched_fragments": 1013,
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Advenella",
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            },
            {
                "accession": "GCF_019132845.1",
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.89",
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            },
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCA_012735395.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Advenella",
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                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_014897675.1",
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.87",
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                "mean_intra_species_ani": "N/A",
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                "status": "-"
            },
            {
                "accession": "GCF_004217095.1",
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            {
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            {
                "accession": "GCF_000506985.1",
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                "accession": "GCF_002236805.1",
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            {
                "accession": "GCF_002261185.1",
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": 0.243,
        "cell_length": 0.243,
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    "_genome_taxon": [
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    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}