{
    "type": "genome",
    "identifier": "GCF_014652475.1",
    "organism": "Vogesella alkaliphila",
    "title": "Vogesella alkaliphila",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_014652475.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMD00245621",
        "wgs_master": "BMYW00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1193621",
        "species_taxid": "1193621",
        "organism_name": "Vogesella alkaliphila",
        "infraspecific_name": "strain=KCTC 32041",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/09/12",
        "asm_name": "ASM1465247v1",
        "asm_submitter": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)",
        "gbrs_paired_asm": "GCA_014652475.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/652/475/GCF_014652475.1_ASM1465247v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3418988",
        "genome_size_ungapped": "3418471",
        "gc_percent": "65.000000",
        "replicon_count": "0",
        "scaffold_count": "29",
        "contig_count": "29",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_014652475.1-RS_2024_09_02",
        "annotation_date": "2024-09-02",
        "total_gene_count": "3283",
        "protein_coding_gene_count": "3183",
        "non_coding_gene_count": "81",
        "pubmed_id": "30832757"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-09-12",
    "dateModified": "2020-09-12",
    "datePublished": "2020-09-12",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Vogesella alkaliphila"
        ],
        "sample_taxid": [
            "1193621"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "not applicable"
        ],
        "sample_host_location_id": [],
        "data_size": "0.934 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 98.44,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3418988",
        "Number of Sequences": "29",
        "Longest Sequences (bp)": "660956",
        "N50 (bp)": "302188",
        "Gap Ratio (%)": "0.015648",
        "GCcontent (%)": "65.1",
        "Number of CDSs": "3158",
        "Average Protein Length": "320.9",
        "Coding Ratio (%)": "88.9",
        "Number of rRNAs": "0",
        "Number of tRNAs": "76",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Vogesella alkaliphila",
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                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 1123,
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                "ani_threshold": 95,
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            {
                "organism_name": "Vogesella indigofera",
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                "accession": "GCA_003633895.1",
                "taxid": 45465,
                "species_taxid": 45465,
                "relation_to_type": "type",
                "validated": true,
                "ani": 94.4532,
                "matched_fragments": 1018,
                "total_fragments": 1125,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Vogesella fluminis",
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                "species_taxid": 1069161,
                "relation_to_type": "type",
                "validated": true,
                "ani": 93.9868,
                "matched_fragments": 859,
                "total_fragments": 1125,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Vogesella urethralis",
                "strain": "strain=YM-1",
                "accession": "GCA_007644045.2",
                "taxid": 2592656,
                "species_taxid": 2592656,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.7234,
                "matched_fragments": 761,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Vogesella mureinivorans",
                "strain": "strain=389",
                "accession": "GCA_007644035.2",
                "taxid": 657276,
                "species_taxid": 657276,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.3586,
                "matched_fragments": 695,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Chromobacterium violaceum",
                "strain": "strain=ATCC 12472",
                "accession": "GCA_000007705.1",
                "taxid": 536,
                "species_taxid": 536,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.9876,
                "matched_fragments": 659,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Crenobacter luteus",
                "strain": "strain=DSM 27258",
                "accession": "GCA_004345725.1",
                "taxid": 1452487,
                "species_taxid": 1452487,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.5926,
                "matched_fragments": 592,
                "total_fragments": 1125,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Chromobacterium piscinae",
                "strain": "strain=DSM 23278",
                "accession": "GCA_021129175.1",
                "taxid": 686831,
                "species_taxid": 686831,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.5763,
                "matched_fragments": 626,
                "total_fragments": 1125,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Chromobacterium alticapitis",
                "strain": "strain=MWU14-2602",
                "accession": "GCA_002924365.1",
                "taxid": 2073169,
                "species_taxid": 2073169,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.3159,
                "matched_fragments": 565,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Chromobacterium sinusclupearum",
                "strain": "strain=MWU13-2610",
                "accession": "GCA_002902845.1",
                "taxid": 2077146,
                "species_taxid": 2077146,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.2582,
                "matched_fragments": 592,
                "total_fragments": 1125,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Chromobacterium aquaticum",
                "strain": "strain=DSM 19852",
                "accession": "GCA_021129195.1",
                "taxid": 467180,
                "species_taxid": 467180,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.0324,
                "matched_fragments": 626,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Crenobacter cavernae",
                "strain": "strain=K1W11S-77",
                "accession": "GCA_003355495.1",
                "taxid": 2290923,
                "species_taxid": 2290923,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.9114,
                "matched_fragments": 554,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Burkholderia perseverans",
                "strain": "strain=INN12",
                "accession": "GCA_022870505.1",
                "taxid": 2615214,
                "species_taxid": 2615214,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 355,
                "total_fragments": 1125,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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                "accession": "GCF_014652475.1",
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                "total_fragments": 1125,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Chromobacteriaceae;g__Vogesella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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            },
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                "mean_intra_species_ani": "N/A",
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            {
                "accession": "GCF_900090205.1",
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                "mean_intra_species_ani": "N/A",
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            {
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    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.26,
        "cell_length": 0.477,
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    "_genome_taxon": [
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    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}