{ "type": "genome", "identifier": "GCF_014652495.1", "organism": "Paludibacterium paludis", "title": "Paludibacterium paludis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014652495.1", "bioproject": "PRJNA224116", "biosample": "SAMD00245622", "wgs_master": "BMYX00000000.1", "refseq_category": "na", "taxid": "1225769", "species_taxid": "1225769", "organism_name": "Paludibacterium paludis", "infraspecific_name": "strain=KCTC 32182", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/09/12", "asm_name": "ASM1465249v1", "asm_submitter": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "gbrs_paired_asm": "GCA_014652495.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/652/495/GCF_014652495.1_ASM1465249v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4004526", "genome_size_ungapped": "4004526", "gc_percent": "62.500000", "replicon_count": "0", "scaffold_count": "64", "contig_count": "64", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014652495.1-RS_2024_09_02", "annotation_date": "2024-09-02", "total_gene_count": "3780", "protein_coding_gene_count": "3634", "non_coding_gene_count": "82", "pubmed_id": "30832757" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-09-12", "dateModified": "2020-09-12", "datePublished": "2020-09-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Paludibacterium paludis" ], "sample_taxid": [ "1225769" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "1.119 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4004526", "Number of Sequences": "64", "Longest Sequences (bp)": "537045", "N50 (bp)": "144669", "Gap Ratio (%)": "0.000350", "GCcontent (%)": "62.7", "Number of CDSs": "3627", "Average Protein Length": "327.4", "Coding Ratio (%)": "89.0", "Number of rRNAs": "1", "Number of tRNAs": "75", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Paludibacterium paludis", "strain": "strain=KCTC 32182", "accession": "GCA_014652495.1", "taxid": 1225769, "species_taxid": 1225769, 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"below_threshold" }, { "organism_name": "Chromobacterium piscinae", "strain": "strain=DSM 23278", "accession": "GCA_021129175.1", "taxid": 686831, "species_taxid": 686831, "relation_to_type": "type", "validated": true, "ani": 78.9808, "matched_fragments": 470, "total_fragments": 1307, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chromobacterium aquaticum", "strain": "strain=DSM 19852", "accession": "GCA_021129195.1", "taxid": 467180, "species_taxid": 467180, "relation_to_type": "type", "validated": true, "ani": 78.978, "matched_fragments": 466, "total_fragments": 1307, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chromobacterium alticapitis", "strain": "strain=MWU14-2602", "accession": "GCA_002924365.1", "taxid": 2073169, "species_taxid": 2073169, "relation_to_type": "type", "validated": true, "ani": 78.9222, "matched_fragments": 430, "total_fragments": 1307, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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"strain": "strain=DSM 18731", "accession": "GCA_000422925.1", "taxid": 400061, "species_taxid": 400061, "relation_to_type": "type", "validated": true, "ani": 78.5287, "matched_fragments": 334, "total_fragments": 1307, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquitalea denitrificans", "strain": "strain=5YN1-3", "accession": "GCA_009856625.1", "taxid": 519081, "species_taxid": 519081, "relation_to_type": "type", "validated": true, "ani": 78.3563, "matched_fragments": 322, "total_fragments": 1307, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gulbenkiania indica", "strain": "strain=DSM 17901", "accession": "GCA_001418035.1", "taxid": 375574, "species_taxid": 375574, "relation_to_type": "type", "validated": true, "ani": 78.1503, "matched_fragments": 315, "total_fragments": 1307, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia terrae", "strain": "strain=JCM 31606", "accession": "GCA_024753145.1", 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