{ "type": "genome", "identifier": "GCF_014652555.1", "organism": "Novosphingobium colocasiae", "title": "Novosphingobium colocasiae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014652555.1", "bioproject": "PRJNA224116", "biosample": "SAMD00245626", "wgs_master": "BMZA00000000.1", "refseq_category": "reference genome", "taxid": "1256513", "species_taxid": "1256513", "organism_name": "Novosphingobium colocasiae", "infraspecific_name": "strain=KCTC 32255", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/09/12", "asm_name": "ASM1465255v1", "asm_submitter": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "gbrs_paired_asm": "GCA_014652555.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/652/555/GCF_014652555.1_ASM1465255v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3778500", "genome_size_ungapped": "3778185", "gc_percent": "65.000000", "replicon_count": "0", "scaffold_count": "72", "contig_count": "72", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014652555.1-RS_2024_09_02", "annotation_date": "2024-09-02", "total_gene_count": "3670", "protein_coding_gene_count": "3545", "non_coding_gene_count": "51", "pubmed_id": "30832757" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-09-12", "dateModified": "2020-09-12", "datePublished": "2020-09-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Novosphingobium colocasiae" ], "sample_taxid": [ "1256513" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "1.043 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3778500", "Number of Sequences": "72", "Longest Sequences (bp)": "758879", "N50 (bp)": "203321", "Gap Ratio (%)": "0.008654", "GCcontent (%)": "65.2", "Number of CDSs": "3576", "Average Protein Length": "313.0", "Coding Ratio (%)": "88.9", "Number of rRNAs": "3", "Number of tRNAs": "50", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Novosphingobium colocasiae", "strain": "strain=KCTC 32255", "accession": "GCA_014652555.1", "taxid": 1256513, "species_taxid": 1256513, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1222, "total_fragments": 1225, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Novosphingobium naphthalenivorans", "strain": "strain=NBRC 102051", "accession": "GCA_001590985.1", "taxid": 273168, "species_taxid": 273168, "relation_to_type": "type", "validated": true, "ani": 80.9602, "matched_fragments": 585, "total_fragments": 1225, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium endophyticum", "strain": "strain=CGMCC 1.15095", "accession": "GCA_014640675.1", "taxid": 1955250, "species_taxid": 1955250, "relation_to_type": "type", "validated": true, "ani": 80.2505, "matched_fragments": 510, "total_fragments": 1225, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium lindaniclasticum", "strain": "strain=LE124", "accession": "GCA_000445125.1", "taxid": 1329895, "species_taxid": 1329895, "relation_to_type": "type", "validated": true, "ani": 80.1831, "matched_fragments": 513, "total_fragments": 1225, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium barchaimii", "strain": "strain=LL02", "accession": "GCA_001046635.1", "taxid": 1420591, "species_taxid": 1420591, "relation_to_type": "type", "validated": true, "ani": 80.1821, "matched_fragments": 583, "total_fragments": 1225, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium guangzhouense", "strain": "strain=SA925", "accession": "GCA_002896965.1", "taxid": 1850347, "species_taxid": 1850347, "relation_to_type": "type", "validated": true, "ani": 80.1163, "matched_fragments": 569, "total_fragments": 1225, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium malaysiense", "strain": "strain=MUSC 273", "accession": "GCA_000802225.1", "taxid": 1348853, "species_taxid": 1348853, "relation_to_type": "type", "validated": true, "ani": 80.0567, "matched_fragments": 509, "total_fragments": 1225, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium indicum", "strain": "strain=CGMCC 1.6784", "accession": "GCA_014645195.1", "taxid": 462949, "species_taxid": 462949, "relation_to_type": "type", "validated": true, "ani": 80.0355, "matched_fragments": 543, "total_fragments": 1225, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium aerophilum", "strain": "strain=4Y4", "accession": "GCA_014230305.1", "taxid": 2839843, "species_taxid": 2839843, "relation_to_type": "type", "validated": true, "ani": 79.7513, "matched_fragments": 458, "total_fragments": 1225, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium profundi", "strain": "strain=F72", "accession": "GCA_018491765.1", "taxid": 1774954, "species_taxid": 1774954, "relation_to_type": "type", "validated": true, "ani": 79.6478, "matched_fragments": 518, "total_fragments": 1225, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium silvae", "strain": "strain=FGD1", "accession": "GCA_009856825.1", "taxid": 2692619, "species_taxid": 2692619, "relation_to_type": "type", "validated": true, "ani": 79.6451, "matched_fragments": 527, "total_fragments": 1225, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium decolorationis", "strain": "strain=502str22", "accession": "GCA_018417475.1", "taxid": 2698673, "species_taxid": 2698673, "relation_to_type": "type", "validated": true, "ani": 79.5474, "matched_fragments": 503, "total_fragments": 1225, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium huizhouense", "strain": "strain=c7", "accession": "GCA_020179475.1", "taxid": 2866625, "species_taxid": 2866625, "relation_to_type": "type", "validated": true, "ani": 79.5231, "matched_fragments": 486, "total_fragments": 1225, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium arvoryzae", "strain": "strain=KCTC 32422", "accession": "GCA_014652615.1", "taxid": 1256514, "species_taxid": 1256514, "relation_to_type": "type", "validated": true, "ani": 79.5112, "matched_fragments": 470, "total_fragments": 1225, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium percolationis", "strain": "strain=c1", "accession": "GCA_020179425.1", "taxid": 2871811, "species_taxid": 2871811, "relation_to_type": "type", "validated": true, "ani": 79.5096, "matched_fragments": 502, "total_fragments": 1225, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium piscinae", "strain": "strain=KCTC 42194", "accession": "GCA_014230355.1", "taxid": 1507448, "species_taxid": 1507448, "relation_to_type": "type", "validated": true, "ani": 79.4797, "matched_fragments": 459, "total_fragments": 1225, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium kunmingense", "strain": "strain=CGMCC 1.12274", "accession": "GCA_002813245.1", "taxid": 1211806, "species_taxid": 1211806, "relation_to_type": "type", "validated": true, "ani": 79.3412, "matched_fragments": 429, "total_fragments": 1225, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium fluoreni", "strain": "strain=DSM 27568", "accession": "GCA_014196615.1", "taxid": 1391222, "species_taxid": 1391222, "relation_to_type": "type", "validated": true, "ani": 79.2836, "matched_fragments": 433, "total_fragments": 1225, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium aquimarinum", "strain": "strain=M24A2M", "accession": "GCA_009746585.1", "taxid": 2682494, "species_taxid": 2682494, "relation_to_type": "type", "validated": true, "ani": 79.1099, "matched_fragments": 470, "total_fragments": 1225, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium subterraneum", "strain": 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