{ "type": "genome", "identifier": "GCF_014652835.1", "organism": "Limoniibacter endophyticus", "title": "Limoniibacter endophyticus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014652835.1", "bioproject": "PRJNA224116", "biosample": "SAMD00245642", "wgs_master": "BMZO00000000.1", "refseq_category": "reference genome", "taxid": "1565040", "species_taxid": "1565040", "organism_name": "Limoniibacter endophyticus", "infraspecific_name": "strain=KCTC 42097", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/09/12", "asm_name": "ASM1465283v1", "asm_submitter": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "gbrs_paired_asm": "GCA_014652835.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/652/835/GCF_014652835.1_ASM1465283v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3657145", "genome_size_ungapped": "3656902", "gc_percent": "57.000000", "replicon_count": "0", "scaffold_count": "24", "contig_count": "24", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014652835.1-RS_2024_05_19", "annotation_date": "2024-05-19", "total_gene_count": "3531", "protein_coding_gene_count": "3427", "non_coding_gene_count": "59", "pubmed_id": "30832757" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-09-12", "dateModified": "2020-09-12", "datePublished": "2020-09-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Limoniibacter endophyticus" ], "sample_taxid": [ "1565040" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "1.037 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3657145", "Number of Sequences": "24", "Longest Sequences (bp)": "497304", "N50 (bp)": "321286", "Gap Ratio (%)": "0.006645", "GCcontent (%)": "57.1", "Number of CDSs": "3514", "Average Protein Length": "306.7", "Coding Ratio (%)": "88.4", "Number of rRNAs": "0", "Number of tRNAs": "48", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Limoniibacter endophyticus", "strain": "strain=KCTC 42097", "accession": "GCA_014652835.1", "taxid": 1565040, "species_taxid": 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"strain=3P27G6", "accession": "GCA_005503535.1", "taxid": 2502215, "species_taxid": 2502215, "relation_to_type": "type", "validated": true, "ani": 76.7673, "matched_fragments": 208, "total_fragments": 1209, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium albiziae", "strain": "strain=DSM 21822", "accession": "GCA_900114255.1", "taxid": 335020, "species_taxid": 335020, "relation_to_type": "type", "validated": true, "ani": 76.7216, "matched_fragments": 198, "total_fragments": 1209, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium esperanzae", "strain": "strain=CNPSo 668", "accession": "GCA_002204185.1", "taxid": 1967781, "species_taxid": 1967781, "relation_to_type": "suspected-type", "validated": true, "ani": 76.7126, "matched_fragments": 159, "total_fragments": 1209, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium norvegicum", "strain": "strain=10.2.2", "accession": 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