{ "type": "genome", "identifier": "GCF_014652915.1", "organism": "Thalassobaculum fulvum", "title": "Thalassobaculum fulvum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014652915.1", "bioproject": "PRJNA224116", "biosample": "SAMD00245651", "wgs_master": "BMZS00000000.1", "refseq_category": "reference genome", "taxid": "1633335", "species_taxid": "1633335", "organism_name": "Thalassobaculum fulvum", "infraspecific_name": "strain=KCTC 42651", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/09/12", "asm_name": "ASM1465291v1", "asm_submitter": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "gbrs_paired_asm": "GCA_014652915.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/652/915/GCF_014652915.1_ASM1465291v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5960362", "genome_size_ungapped": "5959878", "gc_percent": "71.000000", "replicon_count": "0", "scaffold_count": "28", "contig_count": "28", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014652915.1-RS_2024_09_02", "annotation_date": "2024-09-02", "total_gene_count": "5570", "protein_coding_gene_count": "5504", "non_coding_gene_count": "53", "pubmed_id": "30832757" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-09-12", "dateModified": "2020-09-12", "datePublished": "2020-09-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Thalassobaculum fulvum" ], "sample_taxid": [ "1633335" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "1.584 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5960362", "Number of Sequences": "28", "Longest Sequences (bp)": "687776", "N50 (bp)": "357073", "Gap Ratio (%)": "0.008120", "GCcontent (%)": "70.8", "Number of CDSs": "5553", "Average Protein Length": "327.6", "Coding Ratio (%)": "91.6", "Number of rRNAs": "3", "Number of tRNAs": "60", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Thalassobaculum fulvum", "strain": "strain=KCTC 42651", "accession": "GCA_014652915.1", "taxid": 1633335, "species_taxid": 1633335, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oceanibaculum pacificum", "strain": "strain=MCCC 1A02656", "accession": "GCA_001618175.1", "taxid": 580166, "species_taxid": 580166, "relation_to_type": "type", "validated": true, "ani": 77.6699, "matched_fragments": 391, "total_fragments": 1975, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovibrio sodomensis", "strain": "strain=DSM 9895", "accession": "GCA_016583645.1", "taxid": 1088, "species_taxid": 1088, "relation_to_type": "type", "validated": true, "ani": 77.54, "matched_fragments": 488, "total_fragments": 1975, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azospirillum soli", "strain": "strain=CC-LY788", "accession": "GCA_017876165.1", "taxid": 1304799, "species_taxid": 1304799, "relation_to_type": "type", "validated": true, "ani": 77.2047, "matched_fragments": 480, "total_fragments": 1975, "ani_threshold": 95, "status": "below_threshold" }, { 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