{ "type": "genome", "identifier": "GCF_014653095.1", "organism": "Klenkia taihuensis", "title": "Klenkia taihuensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014653095.1", "bioproject": "PRJNA224116", "biosample": "SAMD00244934", "wgs_master": "BNAC00000000.1", "refseq_category": "na", "taxid": "1225127", "species_taxid": "1225127", "organism_name": "Klenkia taihuensis", "infraspecific_name": "strain=CGMCC 1.12303", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/09/12", "asm_name": "ASM1465309v1", "asm_submitter": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "gbrs_paired_asm": "GCA_014653095.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/653/095/GCF_014653095.1_ASM1465309v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4312932", "genome_size_ungapped": "4312932", "gc_percent": "75.000000", "replicon_count": "0", "scaffold_count": "12", "contig_count": "12", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014653095.1-RS_2024_12_23", "annotation_date": "2024-12-23", "total_gene_count": "4283", "protein_coding_gene_count": "4191", "non_coding_gene_count": "53", "pubmed_id": "30832757" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-09-12", "dateModified": "2020-09-12", "datePublished": "2020-09-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Klenkia taihuensis" ], "sample_taxid": [ "1225127" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "1.107 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4312932", "Number of Sequences": "12", "Longest Sequences (bp)": "943336", "N50 (bp)": "730288", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "74.9", "Number of CDSs": "4233", "Average Protein Length": "318.6", "Coding Ratio (%)": "93.8", "Number of rRNAs": "0", "Number of tRNAs": "62", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Klenkia taihuensis", "strain": "strain=CGMCC 1.12303", "accession": "GCA_014653095.1", "taxid": 1225127, "species_taxid": 1225127, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1431, "total_fragments": 1432, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Klenkia taihuensis", "strain": "strain=DSM 45962", "accession": "GCA_900112525.1", "taxid": 1225127, "species_taxid": 1225127, "relation_to_type": "type", "validated": true, "ani": 99.9994, "matched_fragments": 1430, "total_fragments": 1432, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Klenkia brasiliensis", "strain": "strain=DSM 44526", "accession": "GCA_900100695.1", "taxid": 333142, "species_taxid": 333142, "relation_to_type": "type", "validated": true, "ani": 92.5327, "matched_fragments": 1260, "total_fragments": 1432, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Klenkia marina", "strain": "strain=DSM 45722", "accession": "GCA_900101025.1", "taxid": 1960309, "species_taxid": 1960309, "relation_to_type": "type", "validated": true, "ani": 88.2854, "matched_fragments": 1168, "total_fragments": 1432, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Klenkia soli", "strain": "strain=DSM 45843", "accession": "GCA_900103975.1", "taxid": 1052260, "species_taxid": 1052260, "relation_to_type": "type", "validated": true, "ani": 87.7618, "matched_fragments": 1163, "total_fragments": 1432, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Modestobacter versicolor", "strain": "strain=DSM 16678", "accession": "GCA_014195485.1", "taxid": 429133, "species_taxid": 429133, "relation_to_type": "type", "validated": true, "ani": 83.1328, "matched_fragments": 950, "total_fragments": 1432, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900112525.1", "gtdb_species": "s__Klenkia taihuensis", "ani": 99.9994, "matched_fragments": 1430, "total_fragments": 1432, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Geodermatophilaceae;g__Klenkia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_900100695.1", "gtdb_species": "s__Klenkia brasiliensis", "ani": 92.5613, "matched_fragments": 1258, "total_fragments": 1432, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Geodermatophilaceae;g__Klenkia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900101025.1", "gtdb_species": "s__Klenkia marina", "ani": 88.3032, "matched_fragments": 1166, "total_fragments": 1432, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Geodermatophilaceae;g__Klenkia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900103975.1", "gtdb_species": "s__Klenkia soli", "ani": 87.7304, "matched_fragments": 1166, "total_fragments": 1432, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Geodermatophilaceae;g__Klenkia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001424485.1", "gtdb_species": "s__Klenkia sp001424485", "ani": 85.9611, "matched_fragments": 1108, "total_fragments": 1432, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Geodermatophilaceae;g__Klenkia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_014218215.1", "gtdb_species": "s__Klenkia sp001424455", "ani": 85.7938, "matched_fragments": 1108, "total_fragments": 1432, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Geodermatophilaceae;g__Klenkia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.10", "min_intra_species_ani": "98.10", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.94", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_014195485.1", "gtdb_species": "s__Modestobacter versicolor", "ani": 83.1801, "matched_fragments": 946, "total_fragments": 1432, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Geodermatophilaceae;g__Modestobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.97", "min_intra_species_ani": "99.97", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_900110555.1", "gtdb_species": "s__Geodermatophilus endophyticus", "ani": 81.4766, "matched_fragments": 871, "total_fragments": 1432, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Geodermatophilaceae;g__Geodermatophilus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_genome_taxon": [ "Klenkia", "taihuensis" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }