{ "type": "genome", "identifier": "GCF_014653155.1", "organism": "Sphingobacterium griseoflavum", "title": "Sphingobacterium griseoflavum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014653155.1", "bioproject": "PRJNA224116", "biosample": "SAMD00244992", "wgs_master": "BNAF00000000.1", "refseq_category": "reference genome", "taxid": "1474952", "species_taxid": "1474952", "organism_name": "Sphingobacterium griseoflavum", "infraspecific_name": "strain=CGMCC 1.12966", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/09/12", "asm_name": "ASM1465315v1", "asm_submitter": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "gbrs_paired_asm": "GCA_014653155.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/653/155/GCF_014653155.1_ASM1465315v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4422254", "genome_size_ungapped": "4422185", "gc_percent": "45.000000", "replicon_count": "0", "scaffold_count": "27", "contig_count": "27", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014653155.1-RS_2024_09_02", "annotation_date": "2024-09-02", "total_gene_count": "3700", "protein_coding_gene_count": "3624", "non_coding_gene_count": "69", "pubmed_id": "30832757" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-09-12", "dateModified": "2020-09-12", "datePublished": "2020-09-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Sphingobacterium griseoflavum" ], "sample_taxid": [ "1474952" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "1.264 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4422254", "Number of Sequences": "27", "Longest Sequences (bp)": "508265", "N50 (bp)": "305405", "Gap Ratio (%)": "0.001560", "GCcontent (%)": "44.9", "Number of CDSs": "3601", "Average Protein Length": "362.1", "Coding Ratio (%)": "88.5", "Number of rRNAs": "1", "Number of tRNAs": "59", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Sphingobacterium griseoflavum", "strain": "strain=CGMCC 1.12966", "accession": "GCA_014653155.1", "taxid": 1474952, "species_taxid": 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78.3568, "matched_fragments": 95, "total_fragments": 1463, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingobacterium composti Ten et al. 2007 non Yoo et al. 2007", "strain": "strain=KCTC 12578", "accession": "GCA_009829075.1", "taxid": 363260, "species_taxid": 363260, "relation_to_type": "type", "validated": true, "ani": 78.3196, "matched_fragments": 87, "total_fragments": 1463, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingobacterium phlebotomi", "strain": "strain=SSI9", "accession": "GCA_008180195.1", "taxid": 2605433, "species_taxid": 2605433, "relation_to_type": "type", "validated": true, "ani": 78.2393, "matched_fragments": 163, "total_fragments": 1463, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingobacterium lactis", "strain": "strain=DSM 22361", "accession": "GCA_011046555.1", "taxid": 797291, "species_taxid": 797291, "relation_to_type": "type", "validated": true, "ani": 78.2042, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingobacterium chuzhouense", "strain": "strain=KCTC 42746", "accession": "GCA_014692525.1", "taxid": 1742264, "species_taxid": 1742264, "relation_to_type": "type", "validated": true, "ani": 78.0374, "matched_fragments": 184, "total_fragments": 1463, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingobacterium spiritivorum", "strain": "strain=ATCC 33861", "accession": "GCA_000143765.1", "taxid": 258, "species_taxid": 258, "relation_to_type": "suspected-type", "validated": true, "ani": 77.9495, "matched_fragments": 98, "total_fragments": 1463, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingobacterium spiritivorum", "strain": "strain=FDAARGOS_1144", "accession": "GCA_016725645.1", "taxid": 258, "species_taxid": 258, "relation_to_type": "suspected-type", "validated": true, "ani": 77.9281, "matched_fragments": 98, "total_fragments": 1463, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingobacterium spiritivorum", "strain": "strain=NCTC11386", "accession": "GCA_900457435.1", "taxid": 258, "species_taxid": 258, "relation_to_type": "suspected-type", "validated": true, "ani": 77.9078, "matched_fragments": 98, "total_fragments": 1463, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingobacterium paucimobilis", "strain": "strain=HER1398", "accession": "GCA_000416985.1", "taxid": 1385985, "species_taxid": 1385985, "relation_to_type": "type", "validated": true, "ani": 77.7648, "matched_fragments": 104, "total_fragments": 1463, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingobacterium faecale", "strain": "strain=C459-1", "accession": "GCA_016746095.1", "taxid": 2803775, "species_taxid": 2803775, "relation_to_type": "type", "validated": true, "ani": 77.7455, "matched_fragments": 91, "total_fragments": 1463, "ani_threshold": 95, "status": "below_threshold" } ], 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