{ "type": "genome", "identifier": "GCF_014655955.1", "organism": "Kitasatospora indigofera", "title": "Kitasatospora indigofera", "description": "na", "data type": "Genome sequencing and assembly", "organization": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014655955.1", "bioproject": "PRJNA224116", "biosample": "SAMD00245494", "wgs_master": "BNBO00000000.1", "refseq_category": "reference genome", "taxid": "67307", "species_taxid": "67307", "organism_name": "Kitasatospora indigofera", "infraspecific_name": "strain=JCM 4646", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/09/12", "asm_name": "ASM1465595v1", "asm_submitter": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "gbrs_paired_asm": "GCA_014655955.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/655/955/GCF_014655955.1_ASM1465595v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "9417550", "genome_size_ungapped": "9415783", "gc_percent": "74.000000", "replicon_count": "0", "scaffold_count": "198", "contig_count": "198", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014655955.1-RS_2024_09_02", "annotation_date": "2024-09-02", "total_gene_count": "8068", "protein_coding_gene_count": "7860", "non_coding_gene_count": "76", "pubmed_id": "30832757" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-09-12", "dateModified": "2020-09-12", "datePublished": "2020-09-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Kitasatospora indigofera" ], "sample_taxid": [ "67307" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "2.485 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 5.21, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "9417550", "Number of Sequences": "198", "Longest Sequences (bp)": "445428", "N50 (bp)": "131717", "Gap Ratio (%)": "0.018763", "GCcontent (%)": "74.1", "Number of CDSs": "8099", "Average Protein Length": "325.2", "Coding Ratio (%)": "83.9", "Number of rRNAs": "3", "Number of tRNAs": "107", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Kitasatospora indigofera", "strain": "strain=JCM 4646", "accession": "GCA_014655955.1", "taxid": 67307, "species_taxid": 67307, 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"status": "below_threshold" }, { "organism_name": "Kitasatospora mediocidica", "strain": "strain=KCTC 9733", "accession": "GCA_000744225.1", "taxid": 58352, "species_taxid": 58352, "relation_to_type": "type", "validated": true, "ani": 83.0249, "matched_fragments": 1591, "total_fragments": 3047, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kitasatospora kifunensis", "strain": "strain=DSM 41654", "accession": "GCA_014203855.1", "taxid": 58351, "species_taxid": 58351, "relation_to_type": "type", "validated": true, "ani": 82.5938, "matched_fragments": 1496, "total_fragments": 3047, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kitasatospora acidiphila", "strain": "strain=MMS16-CNU292", "accession": "GCA_006636205.1", "taxid": 2567942, "species_taxid": 2567942, "relation_to_type": "type", "validated": true, "ani": 82.3542, "matched_fragments": 1452, "total_fragments": 3047, "ani_threshold": 95, "status": "below_threshold" }, { 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