{ "type": "genome", "identifier": "GCF_014680085.1", "organism": "Micromonospora sagamiensis", "title": "Micromonospora sagamiensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014680085.1", "bioproject": "PRJNA224116", "biosample": "SAMD00245352", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "47875", "species_taxid": "47875", "organism_name": "Micromonospora sagamiensis", "infraspecific_name": "strain=JCM 3310", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/09/11", "asm_name": "ASM1468008v1", "asm_submitter": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "gbrs_paired_asm": "GCA_014680085.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/680/085/GCF_014680085.1_ASM1468008v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6930736", "genome_size_ungapped": "6930736", "gc_percent": "72.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014680085.1-RS_2024_12_13", "annotation_date": "2024-12-13", "total_gene_count": "5941", "protein_coding_gene_count": "5751", "non_coding_gene_count": "82", "pubmed_id": "30832757" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-09-11", "dateModified": "2020-09-11", "datePublished": "2020-09-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Micromonospora sagamiensis" ], "sample_taxid": [ "47875" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "1.825 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6930736", "Number of Sequences": "1", "Longest Sequences (bp)": "6930736", "N50 (bp)": "6930736", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "72.5", "Number of CDSs": "5896", "Average Protein Length": "353.3", "Coding Ratio (%)": "90.2", "Number of rRNAs": "9", "Number of tRNAs": "81", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Micromonospora sagamiensis", "strain": "strain=JCM 3310", "accession": "GCA_014680085.1", "taxid": 47875, "species_taxid": 47875, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2308, "total_fragments": 2310, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Micromonospora sagamiensis", "strain": "strain=DSM 43912", "accession": "GCA_007829995.1", "taxid": 47875, "species_taxid": 47875, "relation_to_type": "type", "validated": true, "ani": 99.9976, "matched_fragments": 2304, "total_fragments": 2310, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Micromonospora inyonensis", "strain": "strain=DSM 46123", "accession": "GCA_900091415.1", "taxid": 47866, "species_taxid": 47866, "relation_to_type": "type", "validated": true, "ani": 96.1517, "matched_fragments": 1714, "total_fragments": 2310, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Micromonospora echinospora", "strain": "strain=DSM 43816", "accession": "GCA_900091495.1", "taxid": 1877, "species_taxid": 1877, "relation_to_type": "type", "validated": true, "ani": 91.8906, "matched_fragments": 1944, "total_fragments": 2310, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora echinospora", "strain": "strain=ATCC 15837", "accession": "GCA_002266845.1", "taxid": 1877, "species_taxid": 1877, "relation_to_type": "type", "validated": true, "ani": 91.8237, "matched_fragments": 1920, "total_fragments": 2310, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora pallida", "strain": "strain=DSM 43817", "accession": "GCA_900090325.1", "taxid": 145854, "species_taxid": 145854, "relation_to_type": "type", "validated": true, "ani": 90.3608, "matched_fragments": 1835, "total_fragments": 2310, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora phytophila", "strain": "strain=DSM 105363", "accession": "GCA_023656545.1", "taxid": 709888, "species_taxid": 709888, "relation_to_type": "type", "validated": true, "ani": 84.5668, "matched_fragments": 1072, "total_fragments": 2310, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora peucetia", "strain": "strain=DSM 43363", "accession": "GCA_900091625.1", "taxid": 47871, "species_taxid": 47871, "relation_to_type": "type", "validated": true, "ani": 84.2411, "matched_fragments": 1420, "total_fragments": 2310, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora rosaria", "strain": "strain=DSM 803", "accession": "GCA_001567585.1", "taxid": 47874, "species_taxid": 47874, "relation_to_type": "type", "validated": true, "ani": 84.0423, "matched_fragments": 1313, "total_fragments": 2310, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora nigra", "strain": "strain=DSM 43818", "accession": "GCA_900091585.1", "taxid": 145857, "species_taxid": 145857, "relation_to_type": "type", "validated": true, "ani": 83.9254, "matched_fragments": 1294, "total_fragments": 2310, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora ferruginea", "strain": "strain=28ISP2-46", "accession": "GCA_013694245.1", "taxid": 2749844, "species_taxid": 2749844, "relation_to_type": "type", "validated": true, "ani": 83.9057, "matched_fragments": 1364, "total_fragments": 2310, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora acroterricola", "strain": "strain=5R2A7", "accession": "GCA_003172955.1", "taxid": 2202421, "species_taxid": 2202421, "relation_to_type": "type", "validated": true, "ani": 83.8675, "matched_fragments": 1175, "total_fragments": 2310, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora chersina", "strain": "strain=DSM 44151", "accession": "GCA_900091475.1", "taxid": 47854, "species_taxid": 47854, "relation_to_type": "type", "validated": true, "ani": 83.8008, "matched_fragments": 1373, "total_fragments": 2310, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora humida", "strain": "strain=MMS20-R1-14", "accession": "GCA_016901255.1", "taxid": 2809018, "species_taxid": 2809018, "relation_to_type": "type", "validated": true, "ani": 83.7369, "matched_fragments": 1394, "total_fragments": 2310, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora humi", "strain": "strain=DSM 45647", "accession": "GCA_900090105.1", "taxid": 745366, "species_taxid": 745366, "relation_to_type": "type", "validated": true, "ani": 83.6764, "matched_fragments": 1328, "total_fragments": 2310, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora phaseoli", "strain": "strain=NBRC 110907", "accession": "GCA_016863675.1", "taxid": 1144548, "species_taxid": 1144548, "relation_to_type": "type", "validated": true, "ani": 83.224, "matched_fragments": 1183, "total_fragments": 2310, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora craniellae", "strain": "strain=LHW63014", "accession": "GCA_014764405.1", "taxid": 2294034, "species_taxid": 2294034, "relation_to_type": "type", "validated": true, "ani": 82.9638, "matched_fragments": 1185, "total_fragments": 2310, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora craniellae", "strain": "strain=LHW63014", "accession": "GCA_003419945.1", "taxid": 2294034, "species_taxid": 2294034, "relation_to_type": "type", "validated": true, "ani": 82.9509, "matched_fragments": 1185, "total_fragments": 2310, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora maris", "strain": "strain=NRRL B-24793", "accession": "GCA_001507315.1", "taxid": 1003110, "species_taxid": 1003110, "relation_to_type": "type", "validated": true, "ani": 82.8902, "matched_fragments": 1238, "total_fragments": 2310, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, 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