{ "type": "genome", "identifier": "GCF_014694385.1", "organism": "Pseudomonas typographi", "title": "Pseudomonas typographi", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Universidad de Salamanca", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014694385.1", "bioproject": "PRJNA224116", "biosample": "SAMN14311041", "wgs_master": "JAAOCA000000000.1", "refseq_category": "reference genome", "taxid": "2715964", "species_taxid": "2715964", "organism_name": "Pseudomonas typographi", "infraspecific_name": "strain=CA3A", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/09/22", "asm_name": "ASM1469438v1", "asm_submitter": "Universidad de Salamanca", "gbrs_paired_asm": "GCA_014694385.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/694/385/GCF_014694385.1_ASM1469438v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5979767", "genome_size_ungapped": "5979767", "gc_percent": "62.000000", "replicon_count": "0", "scaffold_count": "209", "contig_count": "209", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014694385.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "5726", "protein_coding_gene_count": "5491", "non_coding_gene_count": "68", "pubmed_id": "32899185" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-09-22", "dateModified": "2020-09-22", "datePublished": "2020-09-22", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudomonas typographi" ], "sample_taxid": [ "2715964" ], "sample_host_organism": [ "Ips typographus" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Czech Republic" ], "sample_host_location_id": [], "data_size": "1.683 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5979767", "Number of Sequences": "209", "Longest Sequences (bp)": "299487", "N50 (bp)": "141379", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "62.1", "Number of CDSs": "5518", "Average Protein Length": "315.7", "Coding Ratio (%)": "87.4", "Number of rRNAs": "4", "Number of tRNAs": "64", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudomonas typographi", "strain": "strain=CA3A", "accession": "GCA_014694385.1", "taxid": 2715964, "species_taxid": 2715964, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1922, "total_fragments": 1927, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pseudomonas muyukensis", "strain": "strain=COW39", "accession": "GCA_019139535.1", "taxid": 2842357, "species_taxid": 2842357, "relation_to_type": "type", "validated": true, "ani": 79.836, "matched_fragments": 691, "total_fragments": 1927, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas eucalypticola", "strain": "strain=NP-1", "accession": "GCA_013374995.1", "taxid": 2599595, "species_taxid": 2599595, "relation_to_type": "type", "validated": true, "ani": 79.7642, "matched_fragments": 728, "total_fragments": 1927, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas xantholysinigenes", "strain": "strain=RW9S1A", "accession": "GCA_014268885.2", "taxid": 2745490, "species_taxid": 2745490, "relation_to_type": "type", "validated": true, "ani": 79.6881, "matched_fragments": 668, "total_fragments": 1927, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas mosselii", "strain": "strain=DSM 17497", "accession": "GCA_000621225.1", "taxid": 78327, "species_taxid": 78327, "relation_to_type": "type", "validated": true, "ani": 79.5969, "matched_fragments": 673, "total_fragments": 1927, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas oryzicola", "strain": "strain=RD9SR1", "accession": "GCA_014269185.2", "taxid": 485876, "species_taxid": 485876, "relation_to_type": "type", "validated": true, "ani": 79.5349, "matched_fragments": 615, "total_fragments": 1927, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas japonica", "strain": "strain=NBRC 103040", "accession": "GCA_000730585.1", "taxid": 256466, "species_taxid": 256466, "relation_to_type": "type", "validated": true, "ani": 79.5253, "matched_fragments": 666, "total_fragments": 1927, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas mosselii", "strain": "strain=DSM 17497", "accession": "GCA_019823065.1", "taxid": 78327, "species_taxid": 78327, "relation_to_type": "type", "validated": true, "ani": 79.5151, "matched_fragments": 671, "total_fragments": 1927, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas japonica", "strain": "strain=DSM 22348", "accession": "GCA_900188455.1", "taxid": 256466, "species_taxid": 256466, "relation_to_type": "type", "validated": true, "ani": 79.5123, "matched_fragments": 667, "total_fragments": 1927, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas oryziphila", "strain": "strain=1257", "accession": "GCA_003940825.1", "taxid": 2894079, "species_taxid": 2894079, "relation_to_type": "type", "validated": true, "ani": 79.5055, "matched_fragments": 691, "total_fragments": 1927, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas capeferrum", "strain": "strain=WCS358", "accession": "GCA_000731675.1", "taxid": 1495066, "species_taxid": 1495066, "relation_to_type": "type", "validated": true, "ani": 79.4256, "matched_fragments": 623, "total_fragments": 1927, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas rhizosphaerae", "strain": "strain=DSM 16299", "accession": "GCA_000761155.1", "taxid": 216142, "species_taxid": 216142, "relation_to_type": "type", "validated": true, "ani": 79.372, "matched_fragments": 631, "total_fragments": 1927, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas alkylphenolica", "strain": "strain=KL28", "accession": "GCA_000746525.1", "taxid": 237609, "species_taxid": 237609, "relation_to_type": "type", "validated": true, "ani": 79.3448, "matched_fragments": 600, "total_fragments": 1927, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas bharatica", "strain": "strain=CSV86", "accession": "GCA_000319305.2", "taxid": 2692112, "species_taxid": 2692112, "relation_to_type": "type", "validated": true, "ani": 79.3325, "matched_fragments": 668, "total_fragments": 1927, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas massiliensis", "strain": "strain=CB1", "accession": "GCA_000826105.1", "taxid": 522492, "species_taxid": 522492, "relation_to_type": "type", "validated": true, "ani": 79.225, "matched_fragments": 629, "total_fragments": 1927, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas zanjanensis", "strain": "strain=SWRI12", "accession": "GCA_014268745.2", "taxid": 2745496, "species_taxid": 2745496, "relation_to_type": "type", "validated": true, "ani": 79.2215, "matched_fragments": 595, "total_fragments": 1927, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas bijieensis", "strain": "strain=L22-9", "accession": "GCA_013347965.1", "taxid": 2681983, "species_taxid": 2681983, "relation_to_type": "type", "validated": true, "ani": 79.0692, "matched_fragments": 659, "total_fragments": 1927, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas lalucatii", "strain": "strain=R1b54", "accession": "GCA_018398425.1", "taxid": 1424203, "species_taxid": 1424203, "relation_to_type": "type", "validated": true, "ani": 78.9749, "matched_fragments": 522, "total_fragments": 1927, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas insulae", "strain": "strain=UL073", "accession": "GCA_016901015.1", "taxid": 2809017, "species_taxid": 2809017, "relation_to_type": "type", "validated": true, "ani": 78.7602, "matched_fragments": 515, "total_fragments": 1927, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas quercus", "strain": "strain=hsmgli-8", "accession": "GCA_012033695.1", "taxid": 2722792, "species_taxid": 2722792, "relation_to_type": "type", "validated": true, "ani": 78.6987, "matched_fragments": 514, "total_fragments": 1927, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas mangiferae", "strain": "strain=DMKU BBB3-04", "accession": "GCA_007109405.1", "taxid": 2593654, "species_taxid": 2593654, "relation_to_type": "type", "validated": true, "ani": 78.6474, "matched_fragments": 505, "total_fragments": 1927, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas aromaticivorans", "strain": "strain=MAP12", "accession": "GCA_019097855.1", "taxid": 2849492, "species_taxid": 2849492, "relation_to_type": "type", "validated": true, "ani": 78.6446, "matched_fragments": 430, "total_fragments": 1927, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stutzerimonas degradans", "strain": "strain=FDAARGOS_876", "accession": "GCA_016028635.1", "taxid": 2968968, "species_taxid": 2968968, "relation_to_type": "suspected-type", "validated": true, "ani": 78.1959, "matched_fragments": 427, "total_fragments": 1927, "ani_threshold": 95, "status": 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