{ "type": "genome", "identifier": "GCF_014698995.1", "organism": "Hymenobacter duratus", "title": "Hymenobacter duratus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Seoul Women's University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014698995.1", "bioproject": "PRJNA224116", "biosample": "SAMN16092548", "wgs_master": "JACWZZ000000000.1", "refseq_category": "reference genome", "taxid": "2771356", "species_taxid": "2771356", "organism_name": "Hymenobacter duratus", "infraspecific_name": "strain=BT646", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/09/22", "asm_name": "ASM1469899v1", "asm_submitter": "Seoul Women's University", "gbrs_paired_asm": "GCA_014698995.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/698/995/GCF_014698995.1_ASM1469899v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4665453", "genome_size_ungapped": "4665453", "gc_percent": "59.500000", "replicon_count": "0", "scaffold_count": "7", "contig_count": "7", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014698995.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "4002", "protein_coding_gene_count": "3935", "non_coding_gene_count": "50", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-09-22", "dateModified": "2020-09-22", "datePublished": "2020-09-22", "_annotation": { "sample_count": 1, "sample_organism": [ "Hymenobacter duratus" ], "sample_taxid": [ "2771356" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Gwangju-si" ], "sample_host_location_id": [], "data_size": "1.313 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4665453", "Number of Sequences": "7", "Longest Sequences (bp)": "1910563", "N50 (bp)": "1283424", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "59.5", "Number of CDSs": "3997", "Average Protein Length": "338.9", "Coding Ratio (%)": "87.1", "Number of rRNAs": "2", "Number of tRNAs": "46", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Hymenobacter duratus", "strain": "strain=BT646", "accession": "GCA_014698995.1", "taxid": 2771356, "species_taxid": 2771356, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1551, "total_fragments": 1551, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Hymenobacter psychrotolerans", "strain": "strain=DSM 18569", "accession": "GCA_900142395.1", "taxid": 344998, "species_taxid": 344998, "relation_to_type": "type", "validated": true, "ani": 86.3494, "matched_fragments": 1195, "total_fragments": 1551, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter perfusus", "strain": "strain=LMG 26000", "accession": "GCA_003944765.1", "taxid": 1236770, "species_taxid": 1236770, "relation_to_type": "type", "validated": true, "ani": 82.1138, "matched_fragments": 930, "total_fragments": 1551, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter swuensis", "strain": "strain=DY53", "accession": "GCA_000576555.1", "taxid": 1446467, "species_taxid": 1446467, "relation_to_type": "type", "validated": true, "ani": 81.6736, "matched_fragments": 909, "total_fragments": 1551, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter rigui", "strain": "strain=KCTC 12533", "accession": "GCA_003944715.1", "taxid": 334424, "species_taxid": 334424, "relation_to_type": "type", "validated": true, "ani": 81.5096, "matched_fragments": 907, "total_fragments": 1551, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter piscis", "strain": "strain=NST-14", "accession": "GCA_018760735.1", "taxid": 2839984, "species_taxid": 2839984, "relation_to_type": "type", "validated": true, "ani": 81.4933, "matched_fragments": 878, "total_fragments": 1551, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter telluris", "strain": "strain=BT186", "accession": "GCA_017313265.1", "taxid": 2816474, "species_taxid": 2816474, "relation_to_type": "type", "validated": true, "ani": 81.2054, "matched_fragments": 970, "total_fragments": 1551, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter metallilatus", "strain": "strain=9PBR-2", "accession": "GCA_003944705.1", "taxid": 2493666, "species_taxid": 2493666, "relation_to_type": "type", "validated": true, "ani": 81.1702, "matched_fragments": 871, "total_fragments": 1551, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter guriensis", "strain": "strain=BT594", "accession": "GCA_015773195.1", "taxid": 2793065, "species_taxid": 2793065, "relation_to_type": "type", "validated": true, "ani": 80.87, "matched_fragments": 832, "total_fragments": 1551, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter daecheongensis", "strain": "strain=DSM 21074", "accession": "GCA_900141805.1", "taxid": 496053, "species_taxid": 496053, "relation_to_type": "type", "validated": true, "ani": 80.8225, "matched_fragments": 838, "total_fragments": 1551, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter glacieicola", "strain": "strain=CGMCC 1.12990", "accession": "GCA_014640315.1", "taxid": 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"relation_to_type": "type", "validated": true, "ani": 80.1673, "matched_fragments": 799, "total_fragments": 1551, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter amundsenii", "strain": "strain=CCM 8682", "accession": "GCA_002204745.1", "taxid": 2006685, "species_taxid": 2006685, "relation_to_type": "type", "validated": true, "ani": 80.0939, "matched_fragments": 778, "total_fragments": 1551, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter fodinae", "strain": "strain=92R-1", "accession": "GCA_004745825.1", "taxid": 2510796, "species_taxid": 2510796, "relation_to_type": "type", "validated": true, "ani": 79.6249, "matched_fragments": 747, "total_fragments": 1551, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter armeniacus", "strain": "strain=BT189", "accession": "GCA_014699055.1", "taxid": 2771358, "species_taxid": 2771358, "relation_to_type": "type", "validated": true, "ani": 79.285, "matched_fragments": 716, "total_fragments": 1551, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_018145755.1", "gtdb_species": "s__Hymenobacter sp018145755", "ani": 100.0, "matched_fragments": 1551, "total_fragments": 1551, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Hymenobacteraceae;g__Hymenobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_014250515.1", "gtdb_species": "s__Hymenobacter sp014250515", "ani": 92.2523, "matched_fragments": 1356, "total_fragments": 1551, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Hymenobacteraceae;g__Hymenobacter", 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