{ "type": "genome", "identifier": "GCF_014699005.1", "organism": "Spirosoma profusum", "title": "Spirosoma profusum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Seoul Women's University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014699005.1", "bioproject": "PRJNA224116", "biosample": "SAMN16092454", "wgs_master": "JACWZY000000000.1", "refseq_category": "reference genome", "taxid": "2771354", "species_taxid": "2771354", "organism_name": "Spirosoma profusum", "infraspecific_name": "strain=BT702", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/09/22", "asm_name": "ASM1469900v1", "asm_submitter": "Seoul Women's University", "gbrs_paired_asm": "GCA_014699005.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/699/005/GCF_014699005.1_ASM1469900v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "8731341", "genome_size_ungapped": "8731341", "gc_percent": "48.000000", "replicon_count": "0", "scaffold_count": "81", "contig_count": "81", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014699005.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "7095", "protein_coding_gene_count": "7004", "non_coding_gene_count": "47", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-09-22", "dateModified": "2020-09-22", "datePublished": "2020-09-22", "_annotation": { "sample_count": 1, "sample_organism": [ "Spirosoma profusum" ], "sample_taxid": [ "2771354" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Gangwon-do" ], "sample_host_location_id": [], "data_size": "2.494 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.38, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "8731341", "Number of Sequences": "81", "Longest Sequences (bp)": "658542", "N50 (bp)": "182240", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "47.8", "Number of CDSs": "6863", "Average Protein Length": "366.8", "Coding Ratio (%)": "86.5", "Number of rRNAs": "0", "Number of tRNAs": "45", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Spirosoma profusum", "strain": "strain=BT702", "accession": "GCA_014699005.1", "taxid": 2771354, "species_taxid": 2771354, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2864, "total_fragments": 2868, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Spirosoma validum", "strain": "strain=BT704", "accession": "GCA_014699035.1", "taxid": 2771355, "species_taxid": 2771355, "relation_to_type": "type", "validated": true, "ani": 77.9346, "matched_fragments": 722, "total_fragments": 2868, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma aerolatum", "strain": "strain=KACC 17939", "accession": "GCA_002056795.1", "taxid": 1211326, "species_taxid": 1211326, "relation_to_type": "type", "validated": true, "ani": 77.5681, "matched_fragments": 646, "total_fragments": 2868, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma arboris", "strain": "strain=HMF4905", "accession": "GCA_009754945.1", "taxid": 2682092, "species_taxid": 2682092, "relation_to_type": "type", "validated": true, "ani": 77.5346, "matched_fragments": 644, "total_fragments": 2868, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma endbachense", "strain": "strain=I-24", "accession": "GCA_010233585.1", "taxid": 2666025, "species_taxid": 2666025, "relation_to_type": "type", "validated": true, "ani": 77.5092, "matched_fragments": 530, "total_fragments": 2868, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma endophyticum", "strain": "strain=DSM 26130", "accession": "GCA_900112365.1", "taxid": 662367, "species_taxid": 662367, "relation_to_type": "type", "validated": true, "ani": 77.5066, "matched_fragments": 612, "total_fragments": 2868, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma panaciterrae", "strain": "strain=DSM 21099", "accession": "GCA_000374025.1", "taxid": 496058, "species_taxid": 496058, "relation_to_type": "type", "validated": true, "ani": 77.4985, "matched_fragments": 592, "total_fragments": 2868, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma fluviale", "strain": "strain=DSM 29961", "accession": "GCA_900230225.1", "taxid": 1597977, "species_taxid": 1597977, "relation_to_type": "type", "validated": true, "ani": 77.3293, "matched_fragments": 529, "total_fragments": 2868, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma taeanense", "strain": "strain=TS118", "accession": "GCA_013127955.1", "taxid": 2735870, "species_taxid": 2735870, "relation_to_type": "type", "validated": true, "ani": 77.2304, "matched_fragments": 405, "total_fragments": 2868, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma spitsbergense", "strain": "strain=DSM 19989", "accession": "GCA_000374085.1", "taxid": 431554, "species_taxid": 431554, "relation_to_type": "type", "validated": true, "ani": 77.0534, "matched_fragments": 460, "total_fragments": 2868, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma luteum", "strain": "strain=DSM 19990", "accession": "GCA_000374065.1", "taxid": 431553, "species_taxid": 431553, "relation_to_type": "type", "validated": true, "ani": 77.0252, "matched_fragments": 442, "total_fragments": 2868, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma agri", "strain": "strain=KCTC 52727", "accession": "GCA_010747415.1", "taxid": 1987381, "species_taxid": 1987381, "relation_to_type": "type", "validated": true, "ani": 77.0136, "matched_fragments": 423, "total_fragments": 2868, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma sordidisoli", "strain": "strain=TY50", "accession": "GCA_004138325.1", "taxid": 2502893, "species_taxid": 2502893, "relation_to_type": "type", "validated": true, "ani": 76.9977, "matched_fragments": 362, "total_fragments": 2868, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma lacussanchae", "strain": "strain=CPCC 100624", "accession": "GCA_005870035.1", "taxid": 1884249, "species_taxid": 1884249, "relation_to_type": "type", "validated": true, "ani": 76.9252, "matched_fragments": 343, "total_fragments": 2868, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Larkinella knui", "strain": "strain=KCTC42998", "accession": "GCA_003858645.1", "taxid": 2025310, "species_taxid": 2025310, "relation_to_type": "type", "validated": true, "ani": 76.2738, "matched_fragments": 258, "total_fragments": 2868, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.38, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": "GCF_014699005.1", "gtdb_species": "s__Spirosoma profusum", "ani": 100.0, "matched_fragments": 2864, "total_fragments": 2868, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Spirosomaceae;g__Spirosoma", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_014699035.1", "gtdb_species": "s__Spirosoma validum", "ani": 77.9342, "matched_fragments": 722, "total_fragments": 2868, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Spirosomaceae;g__Spirosoma", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_000024525.1", "gtdb_species": "s__Spirosoma linguale", "ani": 77.586, "matched_fragments": 534, "total_fragments": 2868, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Spirosomaceae;g__Spirosoma", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_001898575.1", "gtdb_species": "s__Spirosoma sp001898575", 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"coding_genes": 5677.866, "rRNA16S_genes": 3.0, "tRNA_genes": 42.8, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.2, "range_salinity": null, "facultative_respiration": 0.125, "anaerobic_respiration": 0.0, "aerobic_respiration": 0.875, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Spirosoma", "profusum" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }