{ "type": "genome", "identifier": "GCF_014699035.1", "organism": "Spirosoma validum", "title": "Spirosoma validum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Seoul Women's University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014699035.1", "bioproject": "PRJNA224116", "biosample": "SAMN16092547", "wgs_master": "JACXAA000000000.1", "refseq_category": "reference genome", "taxid": "2771355", "species_taxid": "2771355", "organism_name": "Spirosoma validum", "infraspecific_name": "strain=BT704", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/09/22", "asm_name": "ASM1469903v1", "asm_submitter": "Seoul Women's University", "gbrs_paired_asm": "GCA_014699035.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/699/035/GCF_014699035.1_ASM1469903v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "8221062", "genome_size_ungapped": "8221062", "gc_percent": "48.000000", "replicon_count": "0", "scaffold_count": "39", "contig_count": "39", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014699035.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "6834", "protein_coding_gene_count": "6747", "non_coding_gene_count": "44", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-09-22", "dateModified": "2020-09-22", "datePublished": "2020-09-22", "_annotation": { "sample_count": 1, "sample_organism": [ "Spirosoma validum" ], "sample_taxid": [ "2771355" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Gangwon-do" ], "sample_host_location_id": [], "data_size": "2.350 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "8221062", "Number of Sequences": "39", "Longest Sequences (bp)": "1225383", "N50 (bp)": "456433", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "48.1", "Number of CDSs": "6687", "Average Protein Length": "356.1", "Coding Ratio (%)": "86.9", "Number of rRNAs": "0", "Number of tRNAs": "40", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Spirosoma validum", "strain": "strain=BT704", "accession": "GCA_014699035.1", "taxid": 2771355, "species_taxid": 2771355, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2716, "total_fragments": 2720, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Spirosoma endophyticum", "strain": "strain=DSM 26130", "accession": "GCA_900112365.1", "taxid": 662367, "species_taxid": 662367, "relation_to_type": "type", "validated": true, "ani": 78.6306, "matched_fragments": 905, "total_fragments": 2720, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma profusum", "strain": "strain=BT702", "accession": "GCA_014699005.1", "taxid": 2771354, "species_taxid": 2771354, "relation_to_type": "type", "validated": true, "ani": 77.9636, "matched_fragments": 716, "total_fragments": 2720, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma fluviale", "strain": "strain=DSM 29961", "accession": "GCA_900230225.1", "taxid": 1597977, "species_taxid": 1597977, "relation_to_type": "type", "validated": true, "ani": 77.7795, "matched_fragments": 576, "total_fragments": 2720, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma arboris", "strain": "strain=HMF4905", "accession": "GCA_009754945.1", "taxid": 2682092, "species_taxid": 2682092, "relation_to_type": "type", "validated": true, "ani": 77.6976, "matched_fragments": 676, "total_fragments": 2720, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma aureum", "strain": "strain=BT328", "accession": "GCA_011604685.1", "taxid": 2692134, "species_taxid": 2692134, "relation_to_type": "type", "validated": true, "ani": 77.6412, "matched_fragments": 547, "total_fragments": 2720, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma radiotolerans", "strain": "strain=DG5A", "accession": "GCA_000974425.1", "taxid": 1379870, "species_taxid": 1379870, "relation_to_type": "type", "validated": true, "ani": 77.6182, "matched_fragments": 521, "total_fragments": 2720, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma endbachense", "strain": "strain=I-24", "accession": "GCA_010233585.1", "taxid": 2666025, "species_taxid": 2666025, "relation_to_type": "type", "validated": true, "ani": 77.5485, "matched_fragments": 595, "total_fragments": 2720, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma panaciterrae", "strain": "strain=DSM 21099", "accession": "GCA_000374025.1", "taxid": 496058, "species_taxid": 496058, "relation_to_type": "type", "validated": true, "ani": 77.4821, "matched_fragments": 548, "total_fragments": 2720, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma aerolatum", "strain": "strain=KACC 17939", "accession": "GCA_002056795.1", "taxid": 1211326, "species_taxid": 1211326, "relation_to_type": "type", "validated": true, "ani": 77.4095, "matched_fragments": 561, "total_fragments": 2720, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma spitsbergense", "strain": "strain=DSM 19989", "accession": "GCA_000374085.1", "taxid": 431554, "species_taxid": 431554, "relation_to_type": "type", "validated": true, "ani": 77.2453, "matched_fragments": 475, "total_fragments": 2720, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma luteum", "strain": "strain=DSM 19990", "accession": "GCA_000374065.1", "taxid": 431553, "species_taxid": 431553, "relation_to_type": "type", "validated": true, "ani": 77.0495, "matched_fragments": 422, "total_fragments": 2720, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma rigui", "strain": "strain=KCTC 12531", "accession": "GCA_002067135.1", "taxid": 564064, "species_taxid": 564064, "relation_to_type": "type", "validated": true, "ani": 76.9963, "matched_fragments": 363, "total_fragments": 2720, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Fibrisoma limi", "strain": "strain=BUZ 3", "accession": "GCA_000296815.2", "taxid": 663275, "species_taxid": 663275, "relation_to_type": "type", "validated": true, "ani": 76.8064, "matched_fragments": 320, 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"min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_010747415.1", "gtdb_species": "s__Spirosoma agri", "ani": 78.2412, "matched_fragments": 494, "total_fragments": 2720, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Spirosomaceae;g__Spirosoma", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_006965485.1", "gtdb_species": "s__Spirosoma sp006965485", "ani": 78.0388, "matched_fragments": 697, "total_fragments": 2720, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Spirosomaceae;g__Spirosoma", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", 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