{ "type": "genome", "identifier": "GCF_014705615.1", "organism": "Paenibacillus oceani", "title": "Paenibacillus oceani", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Chinese Academy of Tropical Agricultural Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014705615.1", "bioproject": "PRJNA224116", "biosample": "SAMN16122355", "wgs_master": "JACXJA000000000.1", "refseq_category": "reference genome", "taxid": "2772510", "species_taxid": "2772510", "organism_name": "Paenibacillus oceani", "infraspecific_name": "strain=IB182363", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/09/22", "asm_name": "ASM1470561v1", "asm_submitter": "Chinese Academy of Tropical Agricultural Sciences", "gbrs_paired_asm": "GCA_014705615.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/705/615/GCF_014705615.1_ASM1470561v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "8047219", "genome_size_ungapped": "8047219", "gc_percent": "54.500000", "replicon_count": "0", "scaffold_count": "94", "contig_count": "94", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014705615.1-RS_2024_11_06", "annotation_date": "2024-11-06", "total_gene_count": "6814", "protein_coding_gene_count": "6627", "non_coding_gene_count": "79", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-09-22", "dateModified": "2020-09-22", "datePublished": "2020-09-22", "_annotation": { "sample_count": 1, "sample_organism": [ "Paenibacillus oceani" ], "sample_taxid": [ "2772510" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Sansha" ], "sample_host_location_id": [], "data_size": "2.288 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "8047219", "Number of Sequences": "94", "Longest Sequences (bp)": "413784", "N50 (bp)": "146835", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "54.5", "Number of CDSs": "6827", "Average Protein Length": "331.3", "Coding Ratio (%)": "84.3", "Number of rRNAs": "0", "Number of tRNAs": "69", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Paenibacillus oceani", "strain": "strain=IB182363", "accession": "GCA_014705615.1", "taxid": 2772510, "species_taxid": 2772510, 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"status": "below_threshold" }, { "organism_name": "Paenibacillus darwinianus", "strain": "strain=Br", "accession": "GCA_000598065.1", "taxid": 1380763, "species_taxid": 1380763, "relation_to_type": "type", "validated": true, "ani": 76.7735, "matched_fragments": 129, "total_fragments": 2632, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cohnella candidum", "strain": "strain=18JY8-7", "accession": "GCA_003713065.1", "taxid": 2674991, "species_taxid": 2674991, "relation_to_type": "type", "validated": true, "ani": 76.5992, "matched_fragments": 152, "total_fragments": 2632, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus thalictri", "strain": "strain=N2SHLJ1", "accession": "GCA_004307995.1", "taxid": 2527873, "species_taxid": 2527873, "relation_to_type": "type", "validated": true, "ani": 76.5815, "matched_fragments": 202, "total_fragments": 2632, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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