{ "type": "genome", "identifier": "GCF_014712225.1", "organism": "Pseudarthrobacter sulfonivorans", "title": "Pseudarthrobacter sulfonivorans", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Korea university", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014712225.1", "bioproject": "PRJNA224116", "biosample": "SAMN15945236", "wgs_master": "JACXBW000000000.1", "refseq_category": "reference genome", "taxid": "121292", "species_taxid": "121292", "organism_name": "Pseudarthrobacter sulfonivorans", "infraspecific_name": "strain=ALL", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/09/23", "asm_name": "ASM1471222v1", "asm_submitter": "Korea university", "gbrs_paired_asm": "GCA_014712225.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/712/225/GCF_014712225.1_ASM1471222v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4927723", "genome_size_ungapped": "4927723", "gc_percent": "65.000000", "replicon_count": "0", "scaffold_count": "58", "contig_count": "58", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014712225.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "4538", "protein_coding_gene_count": "4410", "non_coding_gene_count": "56", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-09-23", "dateModified": "2020-09-23", "datePublished": "2020-09-23", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudarthrobacter sulfonivorans" ], "sample_taxid": [ "121292" ], "sample_host_organism": [ "Allium aflatunense" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "United Kingdom: England" ], "sample_host_location_id": [], "data_size": "1.376 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4927723", "Number of Sequences": "58", "Longest Sequences (bp)": "495060", "N50 (bp)": "250850", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "65.1", "Number of CDSs": "4560", "Average Protein Length": "318.4", "Coding Ratio (%)": "88.4", "Number of rRNAs": "3", "Number of tRNAs": "52", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudarthrobacter sulfonivorans", "strain": "strain=ALL", "accession": "GCA_014712225.1", "taxid": 121292, "species_taxid": 121292, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1618, "total_fragments": 1618, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pseudarthrobacter psychrotolerans", "strain": "strain=YJ56", "accession": "GCA_009911795.1", "taxid": 2697569, "species_taxid": 2697569, "relation_to_type": "type", "validated": true, "ani": 85.0974, "matched_fragments": 1034, "total_fragments": 1618, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudarthrobacter siccitolerans", "strain": "strain=4J27", "accession": "GCA_001046895.1", "taxid": 861266, "species_taxid": 861266, "relation_to_type": "type", "validated": true, "ani": 82.3227, "matched_fragments": 869, "total_fragments": 1618, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudarthrobacter polychromogenes", "strain": "strain=CGMCC 1.1927", "accession": "GCA_014644495.1", "taxid": 1676, "species_taxid": 1676, "relation_to_type": "type", "validated": true, "ani": 82.0657, "matched_fragments": 828, "total_fragments": 1618, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudarthrobacter equi", "strain": "strain=IMMIB L-1606", "accession": "GCA_900105535.1", "taxid": 728066, "species_taxid": 728066, "relation_to_type": "type", "validated": true, "ani": 81.994, "matched_fragments": 847, "total_fragments": 1618, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudarthrobacter scleromae", "strain": "strain=CGMCC 1.3601", "accession": "GCA_014644515.1", "taxid": 158897, "species_taxid": 158897, "relation_to_type": "type", "validated": true, "ani": 81.9372, "matched_fragments": 816, "total_fragments": 1618, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudarthrobacter chlorophenolicus", "strain": "strain=A6", "accession": "GCA_000022025.1", "taxid": 85085, "species_taxid": 85085, "relation_to_type": "type", "validated": true, "ani": 81.8838, "matched_fragments": 859, "total_fragments": 1618, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudarthrobacter enclensis", "strain": "strain=NIO-1008", "accession": "GCA_001457025.1", "taxid": 993070, "species_taxid": 993070, "relation_to_type": "type", "validated": true, "ani": 81.8636, "matched_fragments": 845, "total_fragments": 1618, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudarthrobacter enclensis", "strain": "strain=NIO-1008", "accession": "GCA_900094675.1", "taxid": 993070, "species_taxid": 993070, "relation_to_type": "type", "validated": true, "ani": 81.8405, "matched_fragments": 848, "total_fragments": 1618, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudarthrobacter chlorophenolicus", "strain": "strain=A6", "accession": "GCA_900104315.1", "taxid": 85085, "species_taxid": 85085, "relation_to_type": "type", "validated": true, "ani": 81.8167, "matched_fragments": 874, "total_fragments": 1618, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudarthrobacter phenanthrenivorans", "strain": "strain=Sphe3", "accession": "GCA_000189535.1", "taxid": 361575, "species_taxid": 361575, "relation_to_type": "type", "validated": true, "ani": 81.7025, "matched_fragments": 831, "total_fragments": 1618, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter pascens", "strain": "strain=DSM 20545", "accession": "GCA_017052465.1", "taxid": 1677, "species_taxid": 1677, "relation_to_type": "type", "validated": true, "ani": 81.5552, "matched_fragments": 789, "total_fragments": 1618, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenarthrobacter nicotinovorans", "strain": "strain=ATCC 49919", "accession": "GCA_021919345.1", "taxid": 29320, "species_taxid": 29320, "relation_to_type": "suspected-type", "validated": true, "ani": 80.2225, "matched_fragments": 603, "total_fragments": 1618, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter terricola", "strain": "strain=JH1-1", "accession": "GCA_004354015.1", "taxid": 2547396, "species_taxid": 2547396, "relation_to_type": "type", "validated": true, "ani": 79.772, "matched_fragments": 565, "total_fragments": 1618, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter sunyaminii", "strain": "strain=zg-ZUI122", "accession": "GCA_017353495.1", "taxid": 2816859, "species_taxid": 2816859, "relation_to_type": "type", "validated": true, "ani": 78.6686, "matched_fragments": 326, "total_fragments": 1618, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter sunyaminii", "strain": "strain=zg-ZUI122", "accession": "GCA_018866305.1", "taxid": 2816859, "species_taxid": 2816859, "relation_to_type": "type", "validated": true, "ani": 78.6565, "matched_fragments": 323, "total_fragments": 1618, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter jiangjiafuii", "strain": "strain=zg-ZUI227", "accession": "GCA_018622995.1", "taxid": 2817475, "species_taxid": 2817475, "relation_to_type": "type", "validated": true, "ani": 78.6189, "matched_fragments": 367, "total_fragments": 1618, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter mobilis", "strain": "strain=E918", "accession": "GCA_012395835.1", "taxid": 2724944, "species_taxid": 2724944, "relation_to_type": "type", "validated": true, "ani": 78.5, "matched_fragments": 452, "total_fragments": 1618, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_014712225.1", "gtdb_species": "s__Pseudarthrobacter sulfonivorans", "ani": 100.0, "matched_fragments": 1618, "total_fragments": 1618, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Pseudarthrobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_014764445.1", "gtdb_species": "s__Pseudarthrobacter luteus_A", "ani": 86.5506, "matched_fragments": 1093, "total_fragments": 1618, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Pseudarthrobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.74", "min_intra_species_ani": "97.74", "mean_intra_species_af": "0.82", "min_intra_species_af": "0.82", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_006517235.1", "gtdb_species": "s__Pseudarthrobacter sp002929755", "ani": 85.2897, "matched_fragments": 1000, "total_fragments": 1618, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Pseudarthrobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.06", "min_intra_species_ani": "96.06", "mean_intra_species_af": "0.81", "min_intra_species_af": "0.81", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_001484605.1", "gtdb_species": "s__Pseudarthrobacter sulfonivorans_A", "ani": 85.2696, "matched_fragments": 1015, "total_fragments": 1618, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Pseudarthrobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001428335.1", "gtdb_species": "s__Pseudarthrobacter sp001428335", "ani": 85.2073, "matched_fragments": 1000, "total_fragments": 1618, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Pseudarthrobacter", "ani_circumscription_radius": 95.0, 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