{
    "type": "genome",
    "identifier": "GCF_014712735.1",
    "organism": "Microbispora bryophytorum",
    "title": "Microbispora bryophytorum",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Shenyang Agricultural University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_014712735.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN16124566",
        "wgs_master": "JACXKK000000000.1",
        "refseq_category": "na",
        "taxid": "1460882",
        "species_taxid": "1460882",
        "organism_name": "Microbispora bryophytorum",
        "infraspecific_name": "strain=NEAU-TX2-2",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/09/23",
        "asm_name": "ASM1471273v1",
        "asm_submitter": "Shenyang Agricultural University",
        "gbrs_paired_asm": "GCA_014712735.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/712/735/GCF_014712735.1_ASM1471273v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "7834709",
        "genome_size_ungapped": "7834709",
        "gc_percent": "71.000000",
        "replicon_count": "0",
        "scaffold_count": "75",
        "contig_count": "75",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_014712735.1-RS_2024_11_06",
        "annotation_date": "2024-11-06",
        "total_gene_count": "7238",
        "protein_coding_gene_count": "7065",
        "non_coding_gene_count": "71",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-09-23",
    "dateModified": "2020-09-23",
    "datePublished": "2020-09-23",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Microbispora bryophytorum"
        ],
        "sample_taxid": [
            "1460882"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China:Heilongjiang"
        ],
        "sample_host_location_id": [],
        "data_size": "2.112 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 2.31,
        "strain_heterogeneity": 100.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "7834709",
        "Number of Sequences": "75",
        "Longest Sequences (bp)": "689641",
        "N50 (bp)": "255689",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "71.2",
        "Number of CDSs": "7171",
        "Average Protein Length": "321.7",
        "Coding Ratio (%)": "88.3",
        "Number of rRNAs": "3",
        "Number of tRNAs": "72",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Microbispora bryophytorum",
                "strain": "strain=NEAU-TX2-2",
                "accession": "GCA_014712735.1",
                "taxid": 1460882,
                "species_taxid": 1460882,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 2568,
                "total_fragments": 2573,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Microbispora bryophytorum",
                "strain": "strain=CGMCC 4.7138",
                "accession": "GCA_014645855.1",
                "taxid": 1460882,
                "species_taxid": 1460882,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9969,
                "matched_fragments": 2559,
                "total_fragments": 2573,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Microbispora bryophytorum",
                "strain": "strain=DSM 46710",
                "accession": "GCA_006874465.1",
                "taxid": 1460882,
                "species_taxid": 1460882,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9952,
                "matched_fragments": 2560,
                "total_fragments": 2573,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Microbispora camponoti",
                "strain": "strain=2C-HV3",
                "accession": "GCA_014712745.1",
                "taxid": 1677852,
                "species_taxid": 1677852,
                "relation_to_type": "type",
                "validated": true,
                "ani": 97.6619,
                "matched_fragments": 2354,
                "total_fragments": 2573,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Microbispora catharanthi",
                "strain": "strain=CR1-09",
                "accession": "GCA_006334915.2",
                "taxid": 1712871,
                "species_taxid": 1712871,
                "relation_to_type": "type",
                "validated": true,
                "ani": 93.8766,
                "matched_fragments": 2151,
                "total_fragments": 2573,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Microbispora rosea subsp. rosea",
                "strain": "strain=NBRC 14044",
                "accession": "GCA_016863055.1",
                "taxid": 58118,
                "species_taxid": 58117,
                "relation_to_type": "type",
                "validated": true,
                "ani": 93.1819,
                "matched_fragments": 2227,
                "total_fragments": 2573,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Microbispora siamensis",
                "strain": "strain=NBRC 104113",
                "accession": "GCA_016863095.1",
                "taxid": 564413,
                "species_taxid": 564413,
                "relation_to_type": "type",
                "validated": true,
                "ani": 92.7301,
                "matched_fragments": 2055,
                "total_fragments": 2573,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Microbispora oryzae",
                "strain": "strain=RL4-1S",
                "accession": "GCA_017896165.1",
                "taxid": 2806554,
                "species_taxid": 2806554,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.1712,
                "matched_fragments": 1507,
                "total_fragments": 2573,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphaerimonospora thailandensis",
                "strain": "strain=NBRC 107569",
                "accession": "GCA_016863115.1",
                "taxid": 795644,
                "species_taxid": 795644,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.2192,
                "matched_fragments": 1131,
                "total_fragments": 2573,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Microtetraspora malaysiensis",
                "strain": "strain=NBRC 100735",
                "accession": "GCA_001528665.1",
                "taxid": 161358,
                "species_taxid": 161358,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.4045,
                "matched_fragments": 1327,
                "total_fragments": 2573,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nonomuraea rhizosphaerae",
                "strain": "strain=CGMCC 4.7431",
                "accession": "GCA_019396405.1",
                "taxid": 2665663,
                "species_taxid": 2665663,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.8667,
                "matched_fragments": 833,
                "total_fragments": 2573,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nonomuraea aurantiaca",
                "strain": "strain=NEAU-L178",
                "accession": "GCA_020215705.1",
                "taxid": 2878562,
                "species_taxid": 2878562,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.4529,
                "matched_fragments": 1287,
                "total_fragments": 2573,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nonomuraea basaltis",
                "strain": "strain=160415",
                "accession": "GCA_005893125.1",
                "taxid": 2495887,
                "species_taxid": 2495887,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.1366,
                "matched_fragments": 1286,
                "total_fragments": 2573,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 2.31,
            "strain_heterogeneity": 100.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_006874465.1",
                "gtdb_species": "s__Microbispora bryophytorum",
                "ani": 99.9952,
                "matched_fragments": 2560,
                "total_fragments": 2573,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Microbispora",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.22",
                "min_intra_species_ani": "97.66",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 4,
                "status": "conclusive"
            },
            {
                "accession": "GCF_006334915.2",
                "gtdb_species": "s__Microbispora catharanthi",
                "ani": 93.8764,
                "matched_fragments": 2151,
                "total_fragments": 2573,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Microbispora",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.79",
                "min_intra_species_ani": "95.45",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_900156315.1",
                "gtdb_species": "s__Microbispora rosea",
                "ani": 93.1313,
                "matched_fragments": 2267,
                "total_fragments": 2573,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Microbispora",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.16",
                "min_intra_species_ani": "98.33",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_016863095.1",
                "gtdb_species": "s__Microbispora siamensis",
                "ani": 92.7009,
                "matched_fragments": 2059,
                "total_fragments": 2573,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Microbispora",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.99",
                "min_intra_species_ani": "95.83",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_006874475.1",
                "gtdb_species": "s__Microbispora hainanensis",
                "ani": 92.1464,
                "matched_fragments": 2143,
                "total_fragments": 2573,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Microbispora",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.41",
                "min_intra_species_ani": "95.40",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_014161445.1",
                "gtdb_species": "s__Microbispora sp014161445",
                "ani": 91.0443,
                "matched_fragments": 2043,
                "total_fragments": 2573,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Microbispora",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.71",
                "min_intra_species_ani": "98.71",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_014647835.1",
                "gtdb_species": "s__Microbispora aerata",
                "ani": 89.7314,
                "matched_fragments": 1764,
                "total_fragments": 2573,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Microbispora",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_001570385.1",
                "gtdb_species": "s__Microtetraspora glauca",
                "ani": 81.4221,
                "matched_fragments": 1338,
                "total_fragments": 2573,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Microtetraspora",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001528665.1",
                "gtdb_species": "s__Microtetraspora malaysiensis",
                "ani": 81.3932,
                "matched_fragments": 1330,
                "total_fragments": 2573,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Microtetraspora",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900109355.1",
                "gtdb_species": "s__Nonomuraea pusilla",
                "ani": 79.8776,
                "matched_fragments": 1228,
                "total_fragments": 2573,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Nonomuraea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.44",
                "min_intra_species_ani": "99.44",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.97",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_900099965.1",
                "gtdb_species": "s__Nonomuraea jiangxiensis",
                "ani": 79.4124,
                "matched_fragments": 1297,
                "total_fragments": 2573,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Nonomuraea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": 28.0,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": 8684309.667,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 1.0,
        "sporulation": 1.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Microbispora",
        "bryophytorum"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}