{ "type": "genome", "identifier": "GCF_014712745.1", "organism": "Microbispora camponoti", "title": "Microbispora camponoti", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Shenyang Agricultural University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014712745.1", "bioproject": "PRJNA224116", "biosample": "SAMN16124557", "wgs_master": "JACXRZ000000000.1", "refseq_category": "reference genome", "taxid": "1677852", "species_taxid": "1677852", "organism_name": "Microbispora camponoti", "infraspecific_name": "strain=2C-HV3", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/09/23", "asm_name": "ASM1471274v1", "asm_submitter": "Shenyang Agricultural University", "gbrs_paired_asm": "GCA_014712745.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/712/745/GCF_014712745.1_ASM1471274v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "8015934", "genome_size_ungapped": "8015934", "gc_percent": "71.000000", "replicon_count": "0", "scaffold_count": "102", "contig_count": "102", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014712745.1-RS_2024_11_06", "annotation_date": "2024-11-06", "total_gene_count": "7400", "protein_coding_gene_count": "7217", "non_coding_gene_count": "69", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-09-23", "dateModified": "2020-09-23", "datePublished": "2020-09-23", "_annotation": { "sample_count": 1, "sample_organism": [ "Microbispora camponoti" ], "sample_taxid": [ "1677852" ], "sample_host_organism": [ "Camponotus japonicus" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Heilongjiang" ], "sample_host_location_id": [], "data_size": "2.165 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 2.78, "strain_heterogeneity": 75.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "8015934", "Number of Sequences": "102", "Longest Sequences (bp)": "504269", "N50 (bp)": "253732", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "71.0", "Number of CDSs": "7381", "Average Protein Length": "318.9", "Coding Ratio (%)": "88.1", "Number of rRNAs": "5", "Number of tRNAs": "67", "Number of CRISPRs": "7" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Microbispora camponoti", "strain": "strain=2C-HV3", "accession": "GCA_014712745.1", "taxid": 1677852, "species_taxid": 1677852, "relation_to_type": "type", "validated": true, "ani": 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"status": "below_threshold" }, { "organism_name": "Microbispora oryzae", "strain": "strain=RL4-1S", "accession": "GCA_017896165.1", "taxid": 2806554, "species_taxid": 2806554, "relation_to_type": "type", "validated": true, "ani": 83.141, "matched_fragments": 1512, "total_fragments": 2623, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphaerimonospora thailandensis", "strain": "strain=NBRC 107569", "accession": "GCA_016863115.1", "taxid": 795644, "species_taxid": 795644, "relation_to_type": "type", "validated": true, "ani": 82.3544, "matched_fragments": 1114, "total_fragments": 2623, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microtetraspora malaysiensis", "strain": "strain=NBRC 100735", "accession": "GCA_001528665.1", "taxid": 161358, "species_taxid": 161358, "relation_to_type": "type", "validated": true, "ani": 81.1537, "matched_fragments": 1376, "total_fragments": 2623, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea roseoviolacea subsp. carminata", "strain": "strain=DSM 44170", "accession": "GCA_024172185.1", "taxid": 160689, "species_taxid": 103837, "relation_to_type": "type", "validated": true, "ani": 79.8409, "matched_fragments": 1320, "total_fragments": 2623, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea rhizosphaerae", "strain": "strain=CGMCC 4.7431", "accession": "GCA_019396405.1", "taxid": 2665663, "species_taxid": 2665663, "relation_to_type": "type", "validated": true, "ani": 79.824, "matched_fragments": 836, "total_fragments": 2623, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea aurantiaca", "strain": "strain=NEAU-L178", "accession": "GCA_020215705.1", "taxid": 2878562, "species_taxid": 2878562, "relation_to_type": "type", "validated": true, "ani": 79.5024, "matched_fragments": 1285, "total_fragments": 2623, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { 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