{ "type": "genome", "identifier": "GCF_014748335.1", "organism": "Flavobacterium selenitireducens", "title": "Flavobacterium selenitireducens", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Shandong University of Technology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014748335.1", "bioproject": "PRJNA224116", "biosample": "SAMN14480932", "wgs_master": "JAAVIY000000000.1", "refseq_category": "reference genome", "taxid": "2722704", "species_taxid": "2722704", "organism_name": "Flavobacterium selenitireducens", "infraspecific_name": "strain=D33", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/09/25", "asm_name": "ASM1474833v1", "asm_submitter": "Shandong University of Technology", "gbrs_paired_asm": "GCA_014748335.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/748/335/GCF_014748335.1_ASM1474833v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3767005", "genome_size_ungapped": "3767005", "gc_percent": "48.000000", "replicon_count": "0", "scaffold_count": "37", "contig_count": "37", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014748335.1-RS_2024_12_13", "annotation_date": "2024-12-13", "total_gene_count": "3322", "protein_coding_gene_count": "3255", "non_coding_gene_count": "50", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-09-25", "dateModified": "2020-09-25", "datePublished": "2020-09-25", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavobacterium selenitireducens" ], "sample_taxid": [ "2722704" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not collected" ], "sample_host_location_id": [], "data_size": "1.063 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3767005", "Number of Sequences": "37", "Longest Sequences (bp)": "809941", "N50 (bp)": "335364", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "48.0", "Number of CDSs": "3231", "Average Protein Length": "339.1", "Coding Ratio (%)": "87.3", "Number of rRNAs": "2", "Number of tRNAs": "39", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Flavobacterium agri", "strain": "strain=MAH-1", "accession": "GCA_013366395.1", "taxid": 2743471, "species_taxid": 2743471, "relation_to_type": "type", "validated": true, "ani": 79.8577, "matched_fragments": 696, "total_fragments": 1238, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium agri", "strain": "strain=MAH-1", "accession": "GCA_013401995.1", "taxid": 2743471, "species_taxid": 2743471, "relation_to_type": "type", "validated": true, "ani": 79.8533, "matched_fragments": 701, "total_fragments": 1238, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium silvaticum", "strain": "strain=SE-s28", "accession": "GCA_012911565.1", "taxid": 1852020, "species_taxid": 1852020, "relation_to_type": "type", "validated": true, "ani": 77.43, "matched_fragments": 255, "total_fragments": 1238, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium caeni", "strain": "strain=CGMCC 1.7031", "accession": "GCA_900101895.1", "taxid": 490189, "species_taxid": 490189, "relation_to_type": "type", "validated": true, "ani": 77.2929, "matched_fragments": 259, "total_fragments": 1238, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium limnosediminis", "strain": "strain=JC2902", "accession": "GCA_000498535.1", "taxid": 1401027, "species_taxid": 1401027, "relation_to_type": "type", "validated": true, "ani": 76.8886, "matched_fragments": 66, "total_fragments": 1238, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium stagni", "strain": "strain=WWJ-16", "accession": "GCA_004122105.1", "taxid": 2506421, "species_taxid": 2506421, "relation_to_type": "type", "validated": true, "ani": 76.8842, "matched_fragments": 58, "total_fragments": 1238, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium pallidum", "strain": "strain=HYN0049", "accession": "GCA_003097535.1", "taxid": 2172098, "species_taxid": 2172098, "relation_to_type": "type", "validated": true, "ani": 76.8327, "matched_fragments": 116, "total_fragments": 1238, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium noncentrifugens", "strain": "strain=NBRC 108844", "accession": "GCA_007992475.1", "taxid": 1128970, "species_taxid": 1128970, "relation_to_type": "type", "validated": true, "ani": 76.8045, "matched_fragments": 179, "total_fragments": 1238, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium noncentrifugens", "strain": "strain=CGMCC 1.10076", "accession": "GCA_900100375.1", "taxid": 1128970, "species_taxid": 1128970, "relation_to_type": "type", "validated": true, "ani": 76.7916, "matched_fragments": 182, "total_fragments": 1238, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium lotistagni", "strain": "strain=CYK-4", "accession": "GCA_011392125.1", "taxid": 2709660, "species_taxid": 2709660, "relation_to_type": "type", "validated": true, "ani": 76.6454, "matched_fragments": 102, "total_fragments": 1238, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium humi", "strain": "strain=DS2-A", "accession": "GCA_004745595.1", "taxid": 2562683, "species_taxid": 2562683, "relation_to_type": "type", "validated": true, "ani": 76.5825, "matched_fragments": 90, "total_fragments": 1238, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium magnum", "strain": "strain=HYN0048", "accession": "GCA_003055625.1", "taxid": 2162713, "species_taxid": 2162713, "relation_to_type": "type", "validated": true, "ani": 76.5475, "matched_fragments": 121, "total_fragments": 1238, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium suncheonense", "strain": "strain=GH29-5", "accession": "GCA_000769835.1", "taxid": 350894, "species_taxid": 350894, "relation_to_type": "type", "validated": true, "ani": 76.5231, "matched_fragments": 92, "total_fragments": 1238, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium endophyticum", "strain": "strain=DSM 29537", "accession": "GCA_003634455.1", "taxid": 1540163, "species_taxid": 1540163, "relation_to_type": "type", "validated": true, "ani": 76.4977, "matched_fragments": 84, "total_fragments": 1238, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_014748335.1", "gtdb_species": "s__Flavobacterium sp014748335", "ani": 100.0, "matched_fragments": 1237, "total_fragments": 1238, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_013401995.1", "gtdb_species": "s__Flavobacterium agri", "ani": 79.8496, "matched_fragments": 701, "total_fragments": 1238, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_004295795.1", "gtdb_species": "s__Flavobacterium sp004295795", "ani": 79.476, "matched_fragments": 664, "total_fragments": 1238, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_004211145.1", "gtdb_species": "s__Flavobacterium sp004211145", "ani": 78.4471, "matched_fragments": 511, "total_fragments": 1238, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_012911565.1", "gtdb_species": "s__Flavobacterium sp012911565", "ani": 77.4387, "matched_fragments": 255, "total_fragments": 1238, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_015234525.1", "gtdb_species": "s__Flavobacterium sp015234525", "ani": 77.3149, "matched_fragments": 82, "total_fragments": 1238, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900101895.1", "gtdb_species": "s__Flavobacterium caeni", "ani": 77.2923, "matched_fragments": 259, "total_fragments": 1238, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002483285.1", "gtdb_species": "s__Flavobacterium sp002483285", "ani": 76.9129, "matched_fragments": 150, "total_fragments": 1238, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900100375.1", "gtdb_species": "s__Flavobacterium noncentrifugens", "ani": 76.7916, "matched_fragments": 182, "total_fragments": 1238, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_003055625.1", "gtdb_species": "s__Flavobacterium magnum", "ani": 76.522, "matched_fragments": 120, "total_fragments": 1238, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.326, "cell_length": 0.278, "doubling_h": 1.271, "growth_tmp": 24.705, "optimum_tmp": 25.047, "optimum_ph": 7.141, "genome_size": 3988255.815, "gc_content": 34.893, "coding_genes": 3154.048, "rRNA16S_genes": 5.145, "tRNA_genes": 58.611, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.347, "range_salinity": 0.333, "facultative_respiration": 0.049, "anaerobic_respiration": 0.019, "aerobic_respiration": 0.931, "mesophilic_range_tmp": 0.789, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.21, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Flavobacterium", "selenitireducens" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }