{ "type": "genome", "identifier": "GCF_014763045.1", "organism": "Sulfitobacter aestuariivivens", "title": "Sulfitobacter aestuariivivens", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Sungkyunkwan University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014763045.1", "bioproject": "PRJNA224116", "biosample": "SAMN15897712", "wgs_master": "JACTAG000000000.1", "refseq_category": "reference genome", "taxid": "2766981", "species_taxid": "2766981", "organism_name": "Sulfitobacter aestuariivivens", "infraspecific_name": "strain=TSTF-M16", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/09/25", "asm_name": "ASM1476304v1", "asm_submitter": "Sungkyunkwan University", "gbrs_paired_asm": "GCA_014763045.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/763/045/GCF_014763045.1_ASM1476304v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4193151", "genome_size_ungapped": "4193151", "gc_percent": "59.500000", "replicon_count": "0", "scaffold_count": "14", "contig_count": "14", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014763045.1-RS_2024_05_05", "annotation_date": "2024-05-05", "total_gene_count": "4116", "protein_coding_gene_count": "4035", "non_coding_gene_count": "46", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-09-25", "dateModified": "2020-09-25", "datePublished": "2020-09-25", "_annotation": { "sample_count": 1, "sample_organism": [ "Sulfitobacter aestuariivivens" ], "sample_taxid": [ "2766981" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Taean" ], "sample_host_location_id": [], "data_size": "1.181 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4193151", "Number of Sequences": "14", "Longest Sequences (bp)": "1967633", "N50 (bp)": "1647835", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "59.3", "Number of CDSs": "4135", "Average Protein Length": "307.9", "Coding Ratio (%)": "91.1", "Number of rRNAs": "3", "Number of tRNAs": "41", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Sulfitobacter aestuariivivens", "strain": "strain=TSTF-M16", "accession": "GCA_014763045.1", "taxid": 2766981, "species_taxid": 2766981, "relation_to_type": "type", "validated": true, "ani": 100.0, 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"taxid": 335975, "species_taxid": 335975, "relation_to_type": "type", "validated": true, "ani": 77.1116, "matched_fragments": 298, "total_fragments": 1391, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Antarcticimicrobium luteum", "strain": "strain=318-1", "accession": "GCA_004358185.1", "taxid": 2547397, "species_taxid": 2547397, "relation_to_type": "type", "validated": true, "ani": 77.0337, "matched_fragments": 313, "total_fragments": 1391, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfitobacter marinus", "strain": "strain=DSM 23422", "accession": "GCA_900116285.1", "taxid": 394264, "species_taxid": 394264, "relation_to_type": "type", "validated": true, "ani": 76.9106, "matched_fragments": 293, "total_fragments": 1391, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseibacterium elongatum", "strain": "strain=DFL-43", "accession": "GCA_000590925.1", "taxid": 159346, "species_taxid": 159346, 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"psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.833, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.166, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Sulfitobacter", "aestuariivivens" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }