{ "type": "genome", "identifier": "GCF_014764365.1", "organism": "Roseococcus microcysteis", "title": "Roseococcus microcysteis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Korea University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014764365.1", "bioproject": "PRJNA224116", "biosample": "SAMN16088894", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2771361", "species_taxid": "2771361", "organism_name": "Roseococcus microcysteis", "infraspecific_name": "strain=NIBR12", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/09/27", "asm_name": "ASM1476436v1", "asm_submitter": "Korea University", "gbrs_paired_asm": "GCA_014764365.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/764/365/GCF_014764365.1_ASM1476436v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4208010", "genome_size_ungapped": "4208010", "gc_percent": "71.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014764365.1-RS_2024_12_13", "annotation_date": "2024-12-13", "total_gene_count": "4143", "protein_coding_gene_count": "4006", "non_coding_gene_count": "57", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-09-27", "dateModified": "2020-09-27", "datePublished": "2020-09-27", "_annotation": { "sample_count": 1, "sample_organism": [ "Roseococcus microcysteis" ], "sample_taxid": [ "2771361" ], "sample_host_organism": [ "Microcystis aeruginosa" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Daegu" ], "sample_host_location_id": [], "data_size": "1.120 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4208010", "Number of Sequences": "1", "Longest Sequences (bp)": "4208010", "N50 (bp)": "4208010", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "70.9", "Number of CDSs": "4149", "Average Protein Length": "317.2", "Coding Ratio (%)": "93.8", "Number of rRNAs": "6", "Number of tRNAs": "55", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Roseococcus microcysteis", "strain": "strain=NIBR12", "accession": "GCA_014764365.1", "taxid": 2771361, "species_taxid": 2771361, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1401, "total_fragments": 1402, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Roseococcus suduntuyensis", "strain": "strain=DSM 19979", "accession": "GCA_014196305.1", "taxid": 455361, "species_taxid": 455361, "relation_to_type": "type", "validated": true, "ani": 94.4996, "matched_fragments": 1266, "total_fragments": 1402, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseococcus suduntuyensis", "strain": "strain=SHET", "accession": "GCA_017311525.1", "taxid": 455361, "species_taxid": 455361, "relation_to_type": "type", "validated": true, "ani": 94.4826, "matched_fragments": 1267, "total_fragments": 1402, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseococcus thiosulfatophilus", "strain": "strain=RB-3", "accession": "GCA_017311575.1", "taxid": 35813, "species_taxid": 35813, "relation_to_type": "type", "validated": true, "ani": 94.0489, "matched_fragments": 1224, "total_fragments": 1402, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseococcus pinisoli", "strain": "strain=XZZS9", "accession": "GCA_018413645.1", "taxid": 2835040, "species_taxid": 2835040, "relation_to_type": "type", "validated": true, "ani": 80.4288, "matched_fragments": 765, "total_fragments": 1402, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovarius lipocyclicus", "strain": "strain=CCUG 44693", "accession": "GCA_009900765.1", "taxid": 268410, "species_taxid": 268410, "relation_to_type": "type", "validated": true, "ani": 79.8264, "matched_fragments": 710, "total_fragments": 1402, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovarius crocodyli", "strain": "strain=CCP-6", "accession": "GCA_004005855.1", "taxid": 1979269, "species_taxid": 1979269, "relation_to_type": "type", "validated": true, "ani": 79.3764, "matched_fragments": 708, "total_fragments": 1402, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas vastitatis", "strain": "strain=CPCC 101021", "accession": "GCA_003604215.1", "taxid": 2307076, "species_taxid": 2307076, "relation_to_type": "type", "validated": true, "ani": 78.0023, "matched_fragments": 519, "total_fragments": 1402, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_014764365.1", "gtdb_species": "s__Roseococcus sp014764365", "ani": 100.0, "matched_fragments": 1400, "total_fragments": 1402, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Roseococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_014196305.1", "gtdb_species": "s__Roseococcus suduntuyensis", "ani": 94.4996, "matched_fragments": 1266, "total_fragments": 1402, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Roseococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_017311575.1", "gtdb_species": "s__Roseococcus thiosulfatophilus", "ani": 94.0489, "matched_fragments": 1224, "total_fragments": 1402, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Roseococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_007129145.1", "gtdb_species": "s__Roseococcus sp007129145", "ani": 83.7371, "matched_fragments": 433, "total_fragments": 1402, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Roseococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000425365.1", "gtdb_species": "s__Roseococcus flocculans", "ani": 83.1636, "matched_fragments": 873, "total_fragments": 1402, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Roseococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_019083995.1", "gtdb_species": "s__Roseococcus sp019083995", "ani": 82.2326, "matched_fragments": 921, "total_fragments": 1402, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Roseococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_004336745.1", "gtdb_species": "s__Roseococcus sp004336745", "ani": 80.887, "matched_fragments": 817, "total_fragments": 1402, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Roseococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_017355885.1", "gtdb_species": "s__Roseococcus sp017355885", "ani": 80.4916, "matched_fragments": 697, "total_fragments": 1402, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Roseococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003604215.1", "gtdb_species": "s__Roseomonas vastitatis", "ani": 77.9885, "matched_fragments": 521, "total_fragments": 1402, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Roseomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.046, "cell_length": 0.113, "doubling_h": null, "growth_tmp": 27.0, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": 0.0, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_genome_taxon": [ "Roseococcus", "microcysteis" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }