{
    "type": "genome",
    "identifier": "GCF_014779555.2",
    "organism": "Lysobacter capsici",
    "title": "Lysobacter capsici",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "G.K. Skryabin Institute of Biochemistry and Physiology of Microorganisms RAS, FRC PSCBR RAS",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_014779555.2",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN16213518",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "435897",
        "species_taxid": "435897",
        "organism_name": "Lysobacter capsici",
        "infraspecific_name": "strain=VKM B-2533",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/04/14",
        "asm_name": "ASM1477955v2",
        "asm_submitter": "G.K. Skryabin Institute of Biochemistry and Physiology of Microorganisms RAS, FRC PSCBR RAS",
        "gbrs_paired_asm": "GCA_014779555.2",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/779/555/GCF_014779555.2_ASM1477955v2",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "6239188",
        "genome_size_ungapped": "6239188",
        "gc_percent": "67.000000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_014779555.2-RS_2024_05_06",
        "annotation_date": "2024-05-06",
        "total_gene_count": "5163",
        "protein_coding_gene_count": "5058",
        "non_coding_gene_count": "63",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-04-14",
    "dateModified": "2022-04-14",
    "datePublished": "2022-04-14",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Lysobacter capsici"
        ],
        "sample_taxid": [
            "435897"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "South Korea:Jinju"
        ],
        "sample_host_location_id": [],
        "data_size": "1.681 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "6239188",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "6239188",
        "N50 (bp)": "6239188",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "66.9",
        "Number of CDSs": "5131",
        "Average Protein Length": "341.0",
        "Coding Ratio (%)": "84.1",
        "Number of rRNAs": "6",
        "Number of tRNAs": "61",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Lysobacter capsici",
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                "relation_to_type": "type",
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                "ani_threshold": 95,
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            },
            {
                "organism_name": "Lysobacter enzymogenes",
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                "accession": "GCA_900106525.1",
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                "species_taxid": 69,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 86.0521,
                "matched_fragments": 1485,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lysobacter antibioticus",
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                "accession": "GCA_001442535.1",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lysobacter silvisoli",
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                "accession": "GCA_003382365.1",
                "taxid": 2293254,
                "species_taxid": 2293254,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.8106,
                "matched_fragments": 1052,
                "total_fragments": 2079,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Vulcaniibacterium tengchongense",
                "strain": "strain=DSM 25623",
                "accession": "GCA_003814555.1",
                "taxid": 1273429,
                "species_taxid": 1273429,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.4156,
                "matched_fragments": 866,
                "total_fragments": 2079,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lysobacter terrestris",
                "strain": "strain=II4",
                "accession": "GCA_014489475.1",
                "taxid": 2865112,
                "species_taxid": 2865112,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 765,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lysobacter arseniciresistens",
                "strain": "strain=ZS79",
                "accession": "GCA_000768335.1",
                "taxid": 1385522,
                "species_taxid": 1385522,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.8107,
                "matched_fragments": 656,
                "total_fragments": 2079,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lysobacter soli",
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                "accession": "GCA_003382285.1",
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                "species_taxid": 453783,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lysobacter luteus",
                "strain": "strain=CECT 30171",
                "accession": "GCA_907164845.1",
                "taxid": 2822368,
                "species_taxid": 2822368,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.0648,
                "matched_fragments": 599,
                "total_fragments": 2079,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lysobacter chinensis",
                "strain": "strain=TLK-CK17",
                "accession": "GCA_021725675.1",
                "taxid": 2912247,
                "species_taxid": 2912247,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.7876,
                "matched_fragments": 800,
                "total_fragments": 2079,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lysobacter penaei",
                "strain": "strain=SG-8",
                "accession": "GCA_014145395.1",
                "taxid": 2759900,
                "species_taxid": 2759900,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.3144,
                "matched_fragments": 591,
                "total_fragments": 2079,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Stenotrophomonas bentonitica",
                "strain": "strain=DSM 103927",
                "accession": "GCA_013185915.1",
                "taxid": 1450134,
                "species_taxid": 1450134,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.7976,
                "matched_fragments": 651,
                "total_fragments": 2079,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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        "gtdb_result": [
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                "accession": "GCF_014779555.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Lysobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.59",
                "min_intra_species_ani": "97.48",
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            },
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                "accession": "GCF_001427785.1",
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                "mean_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Lysobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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            },
            {
                "accession": "GCF_001442805.1",
                "gtdb_species": "s__Lysobacter gummosus",
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                "mean_intra_species_ani": "N/A",
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                "accession": "GCF_900107375.1",
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                "mean_intra_species_ani": "N/A",
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            },
            {
                "accession": "GCF_000336385.2",
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                "mean_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.398,
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    "_genome_taxon": [
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        "capsici"
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    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}