{ "type": "genome", "identifier": "GCF_014779715.1", "organism": "Streptomyces chumphonensis", "title": "Streptomyces chumphonensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Chulalongkorn University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014779715.1", "bioproject": "PRJNA224116", "biosample": "SAMN16229710", "wgs_master": "JACXYU000000000.1", "refseq_category": "reference genome", "taxid": "1214925", "species_taxid": "1214925", "organism_name": "Streptomyces chumphonensis", "infraspecific_name": "strain=KK1-2", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/09/28", "asm_name": "ASM1477971v1", "asm_submitter": "Chulalongkorn University", "gbrs_paired_asm": "GCA_014779715.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/779/715/GCF_014779715.1_ASM1477971v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5823549", "genome_size_ungapped": "5823549", "gc_percent": "73.500000", "replicon_count": "0", "scaffold_count": "52", "contig_count": "52", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014779715.1-RS_2024_11_06", "annotation_date": "2024-11-06", "total_gene_count": "5233", "protein_coding_gene_count": "5095", "non_coding_gene_count": "68", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-09-28", "dateModified": "2020-09-28", "datePublished": "2020-09-28", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptomyces chumphonensis" ], "sample_taxid": [ "1214925" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Thailand" ], "sample_host_location_id": [], "data_size": "1.546 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 1.04, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5823549", "Number of Sequences": "52", "Longest Sequences (bp)": "1258484", "N50 (bp)": "350958", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "73.3", "Number of CDSs": "5200", "Average Protein Length": "330.9", "Coding Ratio (%)": "88.7", "Number of rRNAs": "3", "Number of tRNAs": "73", "Number of CRISPRs": "4" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptomyces chumphonensis", "strain": "strain=KK1-2", "accession": "GCA_014779715.1", "taxid": 1214925, "species_taxid": 1214925, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1911, "total_fragments": 1918, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Streptomyces durbertensis", "strain": "strain=DSM 104538", "accession": "GCA_014156695.1", "taxid": 2448886, "species_taxid": 2448886, "relation_to_type": "type", "validated": true, "ani": 81.9654, "matched_fragments": 864, "total_fragments": 1918, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces alkaliterrae", "strain": "strain=OF1", "accession": "GCA_007097205.2", "taxid": 2213162, "species_taxid": 2213162, "relation_to_type": "type", "validated": true, "ani": 81.8341, "matched_fragments": 919, "total_fragments": 1918, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces radiopugnans", "strain": "strain=CGMCC 4.3519", "accession": "GCA_900110735.1", "taxid": 403935, "species_taxid": 403935, "relation_to_type": "type", "validated": true, "ani": 81.4021, "matched_fragments": 1023, "total_fragments": 1918, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces barkulensis", "strain": "strain=RC 1831", "accession": "GCA_002811705.2", "taxid": 1257026, "species_taxid": 1257026, "relation_to_type": "type", "validated": true, "ani": 81.3391, "matched_fragments": 1011, "total_fragments": 1918, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces verrucosisporus", "strain": "strain=CPB1-1", "accession": "GCA_017114865.1", "taxid": 1695161, "species_taxid": 1695161, "relation_to_type": "type", "validated": true, "ani": 81.3306, "matched_fragments": 996, "total_fragments": 1918, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces taklimakanensis", "strain": "strain=TRM43335", "accession": "GCA_009709575.1", "taxid": 2569853, "species_taxid": 2569853, "relation_to_type": "type", "validated": true, "ani": 81.0655, "matched_fragments": 980, "total_fragments": 1918, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces gobiensis", "strain": "strain=1_25", "accession": "GCA_021216675.1", "taxid": 2875706, "species_taxid": 2875706, "relation_to_type": "type", "validated": true, "ani": 81.0093, "matched_fragments": 900, "total_fragments": 1918, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces carminius", "strain": "strain=TRM SA0054", "accession": "GCA_002794255.1", "taxid": 2665496, "species_taxid": 2665496, "relation_to_type": "type", "validated": true, "ani": 80.904, "matched_fragments": 985, "total_fragments": 1918, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces benahoarensis", "strain": "strain=MZ03-37", "accession": "GCA_007280575.1", "taxid": 2595054, "species_taxid": 2595054, "relation_to_type": "type", "validated": true, "ani": 80.4678, "matched_fragments": 824, "total_fragments": 1918, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces palmae", "strain": "strain=JCM 31289", "accession": "GCA_004684805.1", "taxid": 1701085, "species_taxid": 1701085, "relation_to_type": "type", "validated": true, "ani": 80.383, "matched_fragments": 866, "total_fragments": 1918, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces albus", "strain": "strain=NBRC 13014", "accession": "GCA_000813365.1", "taxid": 1888, "species_taxid": 1888, "relation_to_type": "suspected-type", "validated": true, "ani": 80.3138, "matched_fragments": 979, "total_fragments": 1918, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces lichenis", "strain": "strain=LCR6-01", "accession": "GCA_023218175.1", "taxid": 2306967, "species_taxid": 2306967, "relation_to_type": "type", "validated": true, "ani": 80.2945, "matched_fragments": 1012, "total_fragments": 1918, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces albus subsp. albus", "strain": "strain=NRRL B-1811", "accession": "GCA_000725885.1", "taxid": 67257, "species_taxid": 1888, "relation_to_type": "suspected-type", "validated": true, "ani": 80.2674, "matched_fragments": 998, "total_fragments": 1918, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces pinistramenti", "strain": "strain=SF28", "accession": "GCA_020564935.1", "taxid": 2884812, "species_taxid": 2884812, "relation_to_type": "type", "validated": true, "ani": 80.2553, "matched_fragments": 920, "total_fragments": 1918, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces genisteinicus", "strain": "strain=CRPJ-33", "accession": "GCA_014489615.1", "taxid": 2768068, "species_taxid": 2768068, "relation_to_type": "type", "validated": true, "ani": 80.2204, "matched_fragments": 1054, "total_fragments": 1918, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces rubrisoli", "strain": "strain=DSM 42083", "accession": "GCA_024436055.1", "taxid": 1387313, "species_taxid": 1387313, "relation_to_type": "type", "validated": true, "ani": 80.1543, "matched_fragments": 823, "total_fragments": 1918, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces sparsogenes", "strain": "strain=ATCC 25498", "accession": "GCA_001704635.1", "taxid": 67365, "species_taxid": 67365, "relation_to_type": "type", "validated": true, "ani": 80.1535, "matched_fragments": 1016, "total_fragments": 1918, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces sennicomposti", "strain": "strain=RCPT1-4", "accession": "GCA_019890635.1", "taxid": 2873384, "species_taxid": 2873384, "relation_to_type": "type", "validated": true, "ani": 80.1348, "matched_fragments": 970, "total_fragments": 1918, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces pactum", "strain": "strain=ATCC 27456", "accession": "GCA_016031615.1", "taxid": 68249, "species_taxid": 68249, "relation_to_type": "type", 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces lomondensis", "strain": "strain=JCM 4866", "accession": "GCA_014651035.1", "taxid": 68229, "species_taxid": 68229, "relation_to_type": "type", "validated": true, "ani": 79.8179, "matched_fragments": 1001, "total_fragments": 1918, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces cellostaticus", "strain": "strain=DSM 40189", "accession": "GCA_001513965.1", "taxid": 67285, "species_taxid": 67285, "relation_to_type": "type", "validated": true, "ani": 79.7617, "matched_fragments": 999, "total_fragments": 1918, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 1.04, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_014779715.1", "gtdb_species": "s__Streptomyces chumphonensis", "ani": 100.0, "matched_fragments": 1911, "total_fragments": 1918, "gtdb_taxonomy": 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