{ "type": "genome", "identifier": "GCF_014779795.1", "organism": "Microbacterium helvum", "title": "Microbacterium helvum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "School of life science", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014779795.1", "bioproject": "PRJNA224116", "biosample": "SAMN16178888", "wgs_master": "JACXZS000000000.1", "refseq_category": "reference genome", "taxid": "2773713", "species_taxid": "2773713", "organism_name": "Microbacterium helvum", "infraspecific_name": "strain=NEAU-LLC", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/09/28", "asm_name": "ASM1477979v1", "asm_submitter": "School of life science", "gbrs_paired_asm": "GCA_014779795.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/779/795/GCF_014779795.1_ASM1477979v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4369725", "genome_size_ungapped": "4369705", "gc_percent": "70.500000", "replicon_count": "0", "scaffold_count": "33", "contig_count": "33", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014779795.1-RS_2024_11_06", "annotation_date": "2024-11-06", "total_gene_count": "4017", "protein_coding_gene_count": "3930", "non_coding_gene_count": "56", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-09-28", "dateModified": "2020-09-28", "datePublished": "2020-09-28", "_annotation": { "sample_count": 1, "sample_organism": [ "Microbacterium helvum" ], "sample_taxid": [ "2773713" ], "sample_host_organism": [ "cow" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Shangzhi" ], "sample_host_location_id": [], "data_size": "1.167 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4369725", "Number of Sequences": "33", "Longest Sequences (bp)": "689004", "N50 (bp)": "319042", "Gap Ratio (%)": "0.000458", "GCcontent (%)": "70.3", "Number of CDSs": "3982", "Average Protein Length": "336.3", "Coding Ratio (%)": "91.9", "Number of rRNAs": "3", "Number of tRNAs": "51", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Microbacterium helvum", "strain": "strain=NEAU-LLC", "accession": "GCA_014779795.1", "taxid": 2773713, "species_taxid": 2773713, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1441, "total_fragments": 1442, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Microbacterium kyungheense", "strain": "strain=DSM 105492", "accession": "GCA_006783905.1", "taxid": 1263636, "species_taxid": 1263636, "relation_to_type": "type", "validated": true, "ani": 87.572, "matched_fragments": 1054, "total_fragments": 1442, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium trichothecenolyticum", "strain": "strain=DSM 8608", "accession": "GCA_000956465.1", "taxid": 69370, "species_taxid": 69370, "relation_to_type": "type", "validated": true, "ani": 84.4333, "matched_fragments": 950, "total_fragments": 1442, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium hibisci", "strain": "strain=CCTCC AB 2016180", "accession": "GCA_015278255.1", "taxid": 2036000, "species_taxid": 2036000, "relation_to_type": "type", "validated": true, "ani": 84.3571, "matched_fragments": 897, "total_fragments": 1442, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium ureisolvens", "strain": "strain=CFH S00084", "accession": "GCA_015278315.1", "taxid": 2781186, "species_taxid": 2781186, "relation_to_type": "type", "validated": true, "ani": 84.2731, "matched_fragments": 936, "total_fragments": 1442, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium cremeum", "strain": "strain=NY27", "accession": "GCA_015277855.1", "taxid": 2782169, "species_taxid": 2782169, "relation_to_type": "type", "validated": true, "ani": 83.6536, "matched_fragments": 859, "total_fragments": 1442, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium yannicii", "strain": "strain=DSM 23203", "accession": "GCA_024055635.1", "taxid": 671622, "species_taxid": 671622, "relation_to_type": "type", "validated": true, "ani": 83.5743, "matched_fragments": 947, "total_fragments": 1442, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium atlanticum", "strain": "strain=WY121", "accession": "GCA_015277815.1", "taxid": 2782168, "species_taxid": 2782168, "relation_to_type": "type", "validated": true, "ani": 83.2811, "matched_fragments": 807, "total_fragments": 1442, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium gallinarum", "strain": "strain=Sa1CUA4", "accession": "GCA_014837165.1", "taxid": 2762209, "species_taxid": 2762209, "relation_to_type": "type", "validated": true, "ani": 82.7246, "matched_fragments": 754, "total_fragments": 1442, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium sulfonylureivorans", "strain": "strain=LAM7116", "accession": "GCA_003999995.1", "taxid": 2486854, "species_taxid": 2486854, "relation_to_type": "type", "validated": true, "ani": 82.5079, "matched_fragments": 782, "total_fragments": 1442, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium telephonicum", "strain": "strain=S2T63", "accession": 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"min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_000380605.1", "gtdb_species": "s__Microbacterium sp000380605", "ani": 87.7494, "matched_fragments": 1082, "total_fragments": 1442, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Microbacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_006783905.1", "gtdb_species": "s__Microbacterium kyungheense", "ani": 87.5595, "matched_fragments": 1055, "total_fragments": 1442, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Microbacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", 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