{ "type": "genome", "identifier": "GCF_014803385.1", "organism": "Marinomonas colpomeniae", "title": "Marinomonas colpomeniae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Shandong Normal University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014803385.1", "bioproject": "PRJNA224116", "biosample": "SAMN16252165", "wgs_master": "JACYFC000000000.1", "refseq_category": "reference genome", "taxid": "2774408", "species_taxid": "2774408", "organism_name": "Marinomonas colpomeniae", "infraspecific_name": "strain=SM2066", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/09/29", "asm_name": "ASM1480338v1", "asm_submitter": "Shandong Normal University", "gbrs_paired_asm": "GCA_014803385.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/803/385/GCF_014803385.1_ASM1480338v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3708185", "genome_size_ungapped": "3706876", "gc_percent": "40.500000", "replicon_count": "0", "scaffold_count": "15", "contig_count": "15", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014803385.1-RS_2024_12_11", "annotation_date": "2024-12-11", "total_gene_count": "3474", "protein_coding_gene_count": "3384", "non_coding_gene_count": "73", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-09-29", "dateModified": "2020-09-29", "datePublished": "2020-09-29", "_annotation": { "sample_count": 1, "sample_organism": [ "Marinomonas colpomeniae" ], "sample_taxid": [ "2774408" ], "sample_host_organism": [ "algae" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Qingdao" ], "sample_host_location_id": [], "data_size": "1.054 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 97.92, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3708185", "Number of Sequences": "15", "Longest Sequences (bp)": "1116274", "N50 (bp)": "889825", "Gap Ratio (%)": "0.035300", "GCcontent (%)": "40.3", "Number of CDSs": "3405", "Average Protein Length": "321.5", "Coding Ratio (%)": "88.6", "Number of rRNAs": "2", "Number of tRNAs": "67", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Marinomonas colpomeniae", "strain": "strain=SM2066", "accession": "GCA_014803385.1", "taxid": 2774408, "species_taxid": 2774408, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1229, "total_fragments": 1229, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Marinomonas ushuaiensis", "strain": "strain=DSM 15871", "accession": "GCA_000521805.1", "taxid": 263818, "species_taxid": 263818, "relation_to_type": "type", "validated": true, "ani": 81.8537, "matched_fragments": 644, "total_fragments": 1229, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinomonas primoryensis", "strain": "strain=MPKMM3633", "accession": "GCA_013372285.1", "taxid": 178399, "species_taxid": 178399, "relation_to_type": "type", "validated": true, "ani": 80.0469, "matched_fragments": 525, "total_fragments": 1229, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinomonas profundimaris", "strain": "strain=D104", "accession": "GCA_000508165.1", "taxid": 1208321, "species_taxid": 1208321, "relation_to_type": "type", "validated": true, "ani": 80.0267, "matched_fragments": 486, "total_fragments": 1229, "ani_threshold": 95, "status": 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