{ "type": "genome", "identifier": "GCF_014805825.1", "organism": "Marinomonas algicola", "title": "Marinomonas algicola", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Shandong Normal University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014805825.1", "bioproject": "PRJNA224116", "biosample": "SAMN16223694", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2773454", "species_taxid": "2773454", "organism_name": "Marinomonas algicola", "infraspecific_name": "strain=SM1966", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/09/30", "asm_name": "ASM1480582v1", "asm_submitter": "Shandong Normal University", "gbrs_paired_asm": "GCA_014805825.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/805/825/GCF_014805825.1_ASM1480582v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4490436", "genome_size_ungapped": "4490436", "gc_percent": "41.500000", "replicon_count": "2", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014805825.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "4119", "protein_coding_gene_count": "3955", "non_coding_gene_count": "116", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-09-30", "dateModified": "2020-09-30", "datePublished": "2020-09-30", "_annotation": { "sample_count": 1, "sample_organism": [ "Marinomonas algicola" ], "sample_taxid": [ "2773454" ], "sample_host_organism": [ "Ulva pertusa (algae)" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Rongcheng" ], "sample_host_location_id": [], "data_size": "1.273 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 99.62, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4490436", "Number of Sequences": "2", "Longest Sequences (bp)": "4341165", "N50 (bp)": "4341165", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "41.7", "Number of CDSs": "4011", "Average Protein Length": "326.5", "Coding Ratio (%)": "87.5", "Number of rRNAs": "28", "Number of tRNAs": "85", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Marinomonas algicola", "strain": "strain=SM1966", "accession": "GCA_014805825.1", "taxid": 2773454, "species_taxid": 2773454, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1496, "total_fragments": 1496, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Marinomonas pollencensis", "strain": "strain=CECT 7375", "accession": "GCA_003387375.1", "taxid": 491954, "species_taxid": 491954, "relation_to_type": "type", "validated": true, "ani": 79.9944, "matched_fragments": 177, "total_fragments": 1496, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinomonas profundimaris", "strain": "strain=D104", "accession": "GCA_000508165.1", "taxid": 1208321, "species_taxid": 1208321, "relation_to_type": "type", "validated": true, "ani": 79.7335, "matched_fragments": 204, "total_fragments": 1496, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinomonas profundi", "strain": "strain=M1K-6", "accession": "GCA_020694005.1", "taxid": 2726122, "species_taxid": 2726122, "relation_to_type": "type", "validated": true, "ani": 79.6109, "matched_fragments": 188, "total_fragments": 1496, "ani_threshold": 95, "status": "below_threshold" }, { 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"strain=CECT 8886", "accession": "GCA_900089775.1", "taxid": 1792290, "species_taxid": 1792290, "relation_to_type": "type", "validated": true, "ani": 78.4808, "matched_fragments": 147, "total_fragments": 1496, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinomonas rhizomae", "strain": "strain=IVIA-Po-145", "accession": "GCA_003721275.1", "taxid": 491948, "species_taxid": 491948, "relation_to_type": "type", "validated": true, "ani": 78.4212, "matched_fragments": 200, "total_fragments": 1496, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinomonas shanghaiensis", "strain": "strain=DSL-35", "accession": "GCA_003259175.1", "taxid": 2202418, "species_taxid": 2202418, "relation_to_type": "type", "validated": true, "ani": 78.415, "matched_fragments": 184, "total_fragments": 1496, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinomonas alcarazii", "strain": "strain=CECT 7730", "accession": "GCA_003208215.1", 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