{ "type": "genome", "identifier": "GCF_014836535.1", "organism": "Microbacterium pullorum", "title": "Microbacterium pullorum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Quadram Institutte", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014836535.1", "bioproject": "PRJNA224116", "biosample": "SAMN15803257", "wgs_master": "JACSQP000000000.1", "refseq_category": "reference genome", "taxid": "2762236", "species_taxid": "2762236", "organism_name": "Microbacterium pullorum", "infraspecific_name": "strain=Sa4CUA7", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/09/30", "asm_name": "ASM1483653v1", "asm_submitter": "Quadram Institutte", "gbrs_paired_asm": "GCA_014836535.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/836/535/GCF_014836535.1_ASM1483653v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3113556", "genome_size_ungapped": "3113476", "gc_percent": "70.000000", "replicon_count": "0", "scaffold_count": "23", "contig_count": "23", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014836535.1-RS_2024_11_18", "annotation_date": "2024-11-18", "total_gene_count": "2935", "protein_coding_gene_count": "2863", "non_coding_gene_count": "52", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-09-30", "dateModified": "2020-09-30", "datePublished": "2020-09-30", "_annotation": { "sample_count": 1, "sample_organism": [ "Microbacterium pullorum" ], "sample_taxid": [ "2762236" ], "sample_host_organism": [ "Gallus gallus" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "United Kingdom: Norwich" ], "sample_host_location_id": [], "data_size": "0.837 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3113556", "Number of Sequences": "23", "Longest Sequences (bp)": "519928", "N50 (bp)": "446428", "Gap Ratio (%)": "0.002569", "GCcontent (%)": "70.1", "Number of CDSs": "2906", "Average Protein Length": "330.5", "Coding Ratio (%)": "92.5", "Number of rRNAs": "3", "Number of tRNAs": "52", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Microbacterium pullorum", "strain": "strain=Sa4CUA7", "accession": "GCA_014836535.1", "taxid": 2762236, "species_taxid": 2762236, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1025, "total_fragments": 1028, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Microbacterium saccharophilum", "strain": "strain=K-1", "accession": "GCA_008017435.1", "taxid": 1213358, "species_taxid": 1213358, "relation_to_type": "type", "validated": true, "ani": 81.7457, "matched_fragments": 560, "total_fragments": 1028, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium telephonicum", "strain": "strain=S2T63", "accession": "GCA_003651225.1", "taxid": 1714841, "species_taxid": 1714841, "relation_to_type": "type", "validated": true, "ani": 81.6537, "matched_fragments": 572, "total_fragments": 1028, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium saccharophilum", "strain": "strain=NBRC 108778", "accession": "GCA_007992455.1", "taxid": 1213358, "species_taxid": 1213358, "relation_to_type": "type", "validated": true, "ani": 81.6531, "matched_fragments": 560, "total_fragments": 1028, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium lacticum", "strain": "strain=JCM 1379", "accession": "GCA_014646835.1", "taxid": 33885, "species_taxid": 33885, "relation_to_type": "type", "validated": true, "ani": 81.4775, "matched_fragments": 519, "total_fragments": 1028, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium lacticum", "strain": "strain=NBRC 14135", "accession": "GCA_006539445.1", "taxid": 33885, "species_taxid": 33885, "relation_to_type": "type", "validated": true, "ani": 81.4477, "matched_fragments": 522, "total_fragments": 1028, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium thalassium", "strain": "strain=DSM 12511", "accession": "GCA_014208045.1", "taxid": 362649, "species_taxid": 362649, "relation_to_type": "type", "validated": true, "ani": 81.3518, "matched_fragments": 558, "total_fragments": 1028, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium lacticum", "strain": "strain=DSM 20427", "accession": "GCA_006716815.1", "taxid": 33885, "species_taxid": 33885, "relation_to_type": "type", "validated": true, "ani": 81.3463, "matched_fragments": 540, "total_fragments": 1028, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium cremeum", "strain": "strain=NY27", "accession": "GCA_015277855.1", "taxid": 2782169, "species_taxid": 2782169, "relation_to_type": "type", "validated": true, "ani": 81.1001, "matched_fragments": 579, "total_fragments": 1028, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium helvum", "strain": "strain=NEAU-LLC", "accession": "GCA_014779795.1", "taxid": 2773713, "species_taxid": 2773713, "relation_to_type": "type", "validated": true, "ani": 81.0441, "matched_fragments": 595, "total_fragments": 1028, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium gallinarum", "strain": "strain=Sa1CUA4", "accession": "GCA_014837165.1", "taxid": 2762209, "species_taxid": 2762209, "relation_to_type": "type", "validated": true, "ani": 81.0284, "matched_fragments": 567, "total_fragments": 1028, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium atlanticum", "strain": "strain=WY121", "accession": "GCA_015277815.1", "taxid": 2782168, "species_taxid": 2782168, "relation_to_type": "type", "validated": true, "ani": 80.9926, "matched_fragments": 569, "total_fragments": 1028, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium wangchenii", "strain": "strain=dk512", "accession": "GCA_004564355.1", "taxid": 2541726, "species_taxid": 2541726, "relation_to_type": "type", "validated": true, "ani": 80.951, "matched_fragments": 542, "total_fragments": 1028, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium flavescens", "strain": "strain=JCM 3877", "accession": "GCA_018588945.1", "taxid": 69366, 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"type", "validated": true, "ani": 80.7679, "matched_fragments": 492, "total_fragments": 1028, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium sulfonylureivorans", "strain": "strain=LAM7116", "accession": "GCA_003999995.1", "taxid": 2486854, "species_taxid": 2486854, "relation_to_type": "type", "validated": true, "ani": 80.7217, "matched_fragments": 580, "total_fragments": 1028, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium timonense", "strain": "strain=Marseille-P5731", "accession": "GCA_900292075.1", "taxid": 2086576, "species_taxid": 2086576, "relation_to_type": "type", "validated": true, "ani": 80.5434, "matched_fragments": 542, "total_fragments": 1028, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium yannicii", "strain": "strain=DSM 23203", "accession": "GCA_024055635.1", "taxid": 671622, "species_taxid": 671622, "relation_to_type": "type", "validated": true, "ani": 80.4258, "matched_fragments": 588, "total_fragments": 1028, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium caowuchunii", "strain": "strain=ST-M6", "accession": "GCA_008727755.1", "taxid": 2614638, "species_taxid": 2614638, "relation_to_type": "type", "validated": true, "ani": 80.217, "matched_fragments": 497, "total_fragments": 1028, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium oryzae", "strain": "strain=MB-10", "accession": "GCA_009735645.1", "taxid": 743009, "species_taxid": 743009, "relation_to_type": "type", "validated": true, "ani": 79.9207, "matched_fragments": 455, "total_fragments": 1028, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium marinilacus", "strain": "strain=YM11-607", "accession": "GCA_019753765.1", "taxid": 415209, "species_taxid": 415209, "relation_to_type": "type", "validated": true, "ani": 79.5308, "matched_fragments": 458, "total_fragments": 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