{
    "type": "genome",
    "identifier": "GCF_014836555.1",
    "organism": "Oerskovia rustica",
    "title": "Oerskovia rustica",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Quadram Institutte",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_014836555.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN15803258",
        "wgs_master": "JACSQQ000000000.1",
        "refseq_category": "reference genome",
        "taxid": "2762237",
        "species_taxid": "2762237",
        "organism_name": "Oerskovia rustica",
        "infraspecific_name": "strain=Sa4CUA1",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/09/30",
        "asm_name": "ASM1483655v1",
        "asm_submitter": "Quadram Institutte",
        "gbrs_paired_asm": "GCA_014836555.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/836/555/GCF_014836555.1_ASM1483655v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4351592",
        "genome_size_ungapped": "4349789",
        "gc_percent": "72.500000",
        "replicon_count": "0",
        "scaffold_count": "80",
        "contig_count": "80",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_014836555.1-RS_2024_11_18",
        "annotation_date": "2024-11-18",
        "total_gene_count": "3919",
        "protein_coding_gene_count": "3826",
        "non_coding_gene_count": "56",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-09-30",
    "dateModified": "2020-09-30",
    "datePublished": "2020-09-30",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Oerskovia rustica"
        ],
        "sample_taxid": [
            "2762237"
        ],
        "sample_host_organism": [
            "Gallus gallus"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "United Kingdom: Norwich"
        ],
        "sample_host_location_id": [],
        "data_size": "1.155 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4351592",
        "Number of Sequences": "80",
        "Longest Sequences (bp)": "266722",
        "N50 (bp)": "118943",
        "Gap Ratio (%)": "0.041433",
        "GCcontent (%)": "72.5",
        "Number of CDSs": "3838",
        "Average Protein Length": "338.0",
        "Coding Ratio (%)": "89.4",
        "Number of rRNAs": "3",
        "Number of tRNAs": "54",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Oerskovia rustica",
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                "relation_to_type": "type",
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            },
            {
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                "species_taxid": 1713,
                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
                "status": "below_threshold"
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            {
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                "accession": "GCA_004121315.1",
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                "species_taxid": 1713,
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                "status": "below_threshold"
            },
            {
                "organism_name": "Oerskovia jenensis",
                "strain": "strain=DSM 46000",
                "accession": "GCA_016907235.1",
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                "species_taxid": 162169,
                "relation_to_type": "type",
                "validated": true,
                "ani": 93.0238,
                "matched_fragments": 1274,
                "total_fragments": 1411,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Oerskovia douganii",
                "strain": "strain=Sa1BUA8",
                "accession": "GCA_015142735.1",
                "taxid": 2762210,
                "species_taxid": 2762210,
                "relation_to_type": "type",
                "validated": true,
                "ani": 90.2028,
                "matched_fragments": 1128,
                "total_fragments": 1411,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Oerskovia enterophila",
                "strain": "strain=DSM 43852",
                "accession": "GCA_001692445.1",
                "taxid": 43678,
                "species_taxid": 43678,
                "relation_to_type": "type",
                "validated": true,
                "ani": 89.6179,
                "matched_fragments": 1179,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Oerskovia merdavium",
                "strain": "strain=Sa2CUA9",
                "accession": "GCA_014836755.1",
                "taxid": 2762227,
                "species_taxid": 2762227,
                "relation_to_type": "type",
                "validated": true,
                "ani": 89.3569,
                "matched_fragments": 1160,
                "total_fragments": 1411,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cellulomonas palmilytica",
                "strain": "strain=EW123",
                "accession": "GCA_021590045.1",
                "taxid": 2608402,
                "species_taxid": 2608402,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.3368,
                "matched_fragments": 601,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cellulomonas avistercoris",
                "strain": "strain=Sa3CUA2",
                "accession": "GCA_014836445.1",
                "taxid": 2762242,
                "species_taxid": 2762242,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.9513,
                "matched_fragments": 558,
                "total_fragments": 1411,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
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            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
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                "accession": "GCF_005937995.2",
                "gtdb_species": "s__Oerskovia sp005937995",
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Oerskovia",
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                "mean_intra_species_ani": "96.13",
                "min_intra_species_ani": "96.13",
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                "num_clustered_genomes": 2,
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            },
            {
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Oerskovia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.78",
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                "num_clustered_genomes": 4,
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            {
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Oerskovia",
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                "mean_intra_species_ani": "N/A",
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            },
            {
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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        ]
    },
    "_bac2feature": {
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    "_genome_taxon": [
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        "rustica"
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    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}