{ "type": "genome", "identifier": "GCF_014836635.1", "organism": "Paenibacillus gallinarum", "title": "Paenibacillus gallinarum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Quadram Institutte", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014836635.1", "bioproject": "PRJNA224116", "biosample": "SAMN15803253", "wgs_master": "JACSQL000000000.1", "refseq_category": "reference genome", "taxid": "2762232", "species_taxid": "2762232", "organism_name": "Paenibacillus gallinarum", "infraspecific_name": "strain=Sa2BVA9", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/09/30", "asm_name": "ASM1483663v1", "asm_submitter": "Quadram Institutte", "gbrs_paired_asm": "GCA_014836635.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/836/635/GCF_014836635.1_ASM1483663v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5411474", "genome_size_ungapped": "5411274", "gc_percent": "41.000000", "replicon_count": "0", "scaffold_count": "59", "contig_count": "59", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014836635.1-RS_2024_11_18", "annotation_date": "2024-11-18", "total_gene_count": "5153", "protein_coding_gene_count": "5042", "non_coding_gene_count": "62", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-09-30", "dateModified": "2020-09-30", "datePublished": "2020-09-30", "_annotation": { "sample_count": 1, "sample_organism": [ "Paenibacillus gallinarum" ], "sample_taxid": [ "2762232" ], "sample_host_organism": [ "Gallus gallus" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "United Kingdom: Norwich" ], "sample_host_location_id": [], "data_size": "1.546 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5411474", "Number of Sequences": "59", "Longest Sequences (bp)": "1029880", "N50 (bp)": "285083", "Gap Ratio (%)": "0.003696", "GCcontent (%)": "41.2", "Number of CDSs": "5145", "Average Protein Length": "296.8", "Coding Ratio (%)": "84.6", "Number of rRNAs": "1", "Number of tRNAs": "45", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Paenibacillus gallinarum", "strain": "strain=Sa2BVA9", "accession": "GCA_014836635.1", "taxid": 2762232, "species_taxid": 2762232, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1774, "total_fragments": 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"GCA_000576305.1", "taxid": 669461, "species_taxid": 669461, "relation_to_type": "type", "validated": true, "ani": 77.4426, "matched_fragments": 139, "total_fragments": 1776, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus tengchongensis", "strain": "strain=SYSU G01003", "accession": "GCA_008973665.1", "taxid": 2608684, "species_taxid": 2608684, "relation_to_type": "type", "validated": true, "ani": 77.4353, "matched_fragments": 67, "total_fragments": 1776, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus turicensis", "strain": "strain=DSM 14349", "accession": "GCA_017873435.1", "taxid": 160487, "species_taxid": 160487, "relation_to_type": "type", "validated": true, "ani": 77.3131, "matched_fragments": 91, "total_fragments": 1776, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus caui", "strain": "strain=81-11", "accession": "GCA_019904135.1", "taxid": 2873927, "species_taxid": 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