{ "type": "genome", "identifier": "GCF_014836675.1", "organism": "Comamonas avium", "title": "Comamonas avium", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Quadram Institutte", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014836675.1", "bioproject": "PRJNA224116", "biosample": "SAMN15803252", "wgs_master": "JACSQK000000000.1", "refseq_category": "reference genome", "taxid": "2762231", "species_taxid": "2762231", "organism_name": "Comamonas avium", "infraspecific_name": "strain=Sa2CVA6", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/09/30", "asm_name": "ASM1483667v1", "asm_submitter": "Quadram Institutte", "gbrs_paired_asm": "GCA_014836675.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/836/675/GCF_014836675.1_ASM1483667v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3926881", "genome_size_ungapped": "3925581", "gc_percent": "57.500000", "replicon_count": "0", "scaffold_count": "19", "contig_count": "19", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014836675.1-RS_2024_11_18", "annotation_date": "2024-11-18", "total_gene_count": "3690", "protein_coding_gene_count": "3580", "non_coding_gene_count": "72", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-09-30", "dateModified": "2020-09-30", "datePublished": "2020-09-30", "_annotation": { "sample_count": 1, "sample_organism": [ "Comamonas avium" ], "sample_taxid": [ "2762231" ], "sample_host_organism": [ "Gallus gallus" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "United Kingdom: Norwich" ], "sample_host_location_id": [], "data_size": "1.104 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3926881", "Number of Sequences": "19", "Longest Sequences (bp)": "586315", "N50 (bp)": "539702", "Gap Ratio (%)": "0.033105", "GCcontent (%)": "57.5", "Number of CDSs": "3597", "Average Protein Length": "312.4", "Coding Ratio (%)": "85.8", "Number of rRNAs": "4", "Number of tRNAs": "68", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Comamonas avium", "strain": "strain=Sa2CVA6", "accession": "GCA_014836675.1", "taxid": 2762231, "species_taxid": 2762231, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1298, "total_fragments": 1299, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Comamonas aquatica", "strain": "strain=NBRC 14918", "accession": "GCA_000739875.1", "taxid": 225991, "species_taxid": 225991, "relation_to_type": "type", "validated": true, "ani": 81.529, "matched_fragments": 763, "total_fragments": 1299, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Comamonas kerstersii", "strain": "strain=CCUG 15333", "accession": "GCA_008801935.1", "taxid": 225992, "species_taxid": 225992, "relation_to_type": "type", "validated": true, "ani": 81.3423, "matched_fragments": 716, "total_fragments": 1299, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Comamonas terrigena", "strain": "strain=NCTC1937", "accession": "GCA_900461435.1", "taxid": 32013, "species_taxid": 32013, "relation_to_type": "type", "validated": true, "ani": 80.0573, "matched_fragments": 648, "total_fragments": 1299, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Comamonas fluminis", "strain": "strain=CJ34", "accession": "GCA_019186805.1", "taxid": 2796366, "species_taxid": 2796366, "relation_to_type": "type", "validated": true, "ani": 79.8459, "matched_fragments": 507, "total_fragments": 1299, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Comamonas suwonensis", "strain": "strain=EJ-4", "accession": "GCA_012844455.2", "taxid": 2606214, "species_taxid": 2606214, "relation_to_type": "type", "validated": true, "ani": 79.5757, "matched_fragments": 513, "total_fragments": 1299, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Comamonas thiooxydans", "strain": "strain=DSM 17888", "accession": "GCA_000964545.1", "taxid": 363952, "species_taxid": 363952, "relation_to_type": "type", "validated": true, "ani": 79.156, "matched_fragments": 519, "total_fragments": 1299, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Comamonas thiooxydans", "strain": "strain=DSM 17888", "accession": 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