{
    "type": "genome",
    "identifier": "GCF_014836755.1",
    "organism": "Oerskovia merdavium",
    "title": "Oerskovia merdavium",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Quadram Institutte",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_014836755.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN15803247",
        "wgs_master": "JACSQF000000000.1",
        "refseq_category": "reference genome",
        "taxid": "2762227",
        "species_taxid": "2762227",
        "organism_name": "Oerskovia merdavium",
        "infraspecific_name": "strain=Sa2CUA9",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/09/30",
        "asm_name": "ASM1483675v1",
        "asm_submitter": "Quadram Institutte",
        "gbrs_paired_asm": "GCA_014836755.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/836/755/GCF_014836755.1_ASM1483675v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4486858",
        "genome_size_ungapped": "4486018",
        "gc_percent": "72.000000",
        "replicon_count": "0",
        "scaffold_count": "46",
        "contig_count": "46",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_014836755.1-RS_2024_11_18",
        "annotation_date": "2024-11-18",
        "total_gene_count": "3978",
        "protein_coding_gene_count": "3880",
        "non_coding_gene_count": "57",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-09-30",
    "dateModified": "2020-09-30",
    "datePublished": "2020-09-30",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Oerskovia merdavium"
        ],
        "sample_taxid": [
            "2762227"
        ],
        "sample_host_organism": [
            "Gallus gallus"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "United Kingdom: Norwich"
        ],
        "sample_host_location_id": [],
        "data_size": "1.192 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4486858",
        "Number of Sequences": "46",
        "Longest Sequences (bp)": "523015",
        "N50 (bp)": "198271",
        "Gap Ratio (%)": "0.018721",
        "GCcontent (%)": "72.1",
        "Number of CDSs": "3951",
        "Average Protein Length": "337.9",
        "Coding Ratio (%)": "89.3",
        "Number of rRNAs": "3",
        "Number of tRNAs": "61",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Oerskovia merdavium",
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                "accession": "GCA_014836755.1",
                "taxid": 2762227,
                "species_taxid": 2762227,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 1474,
                "total_fragments": 1475,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Oerskovia enterophila",
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                "accession": "GCA_001692445.1",
                "taxid": 43678,
                "species_taxid": 43678,
                "relation_to_type": "type",
                "validated": true,
                "ani": 94.4706,
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                "total_fragments": 1475,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Oerskovia douganii",
                "strain": "strain=Sa1BUA8",
                "accession": "GCA_015142735.1",
                "taxid": 2762210,
                "species_taxid": 2762210,
                "relation_to_type": "type",
                "validated": true,
                "ani": 89.9499,
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                "total_fragments": 1475,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Oerskovia rustica",
                "strain": "strain=Sa4CUA1",
                "accession": "GCA_014836555.1",
                "taxid": 2762237,
                "species_taxid": 2762237,
                "relation_to_type": "type",
                "validated": true,
                "ani": 89.3549,
                "matched_fragments": 1166,
                "total_fragments": 1475,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Oerskovia jenensis",
                "strain": "strain=DSM 46000",
                "accession": "GCA_016907235.1",
                "taxid": 162169,
                "species_taxid": 162169,
                "relation_to_type": "type",
                "validated": true,
                "ani": 89.2519,
                "matched_fragments": 1184,
                "total_fragments": 1475,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Oerskovia turbata",
                "strain": "strain=JCM3160",
                "accession": "GCA_004121315.1",
                "taxid": 1713,
                "species_taxid": 1713,
                "relation_to_type": "type",
                "validated": true,
                "ani": 89.0529,
                "matched_fragments": 1105,
                "total_fragments": 1475,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Oerskovia turbata",
                "strain": "strain=NRRL B-8019",
                "accession": "GCA_000718325.1",
                "taxid": 1713,
                "species_taxid": 1713,
                "relation_to_type": "type",
                "validated": true,
                "ani": 89.0299,
                "matched_fragments": 1095,
                "total_fragments": 1475,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cellulomonas palmilytica",
                "strain": "strain=EW123",
                "accession": "GCA_021590045.1",
                "taxid": 2608402,
                "species_taxid": 2608402,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.2843,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cellulomonas avistercoris",
                "strain": "strain=Sa3CUA2",
                "accession": "GCA_014836445.1",
                "taxid": 2762242,
                "species_taxid": 2762242,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.8018,
                "matched_fragments": 561,
                "total_fragments": 1475,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_014836755.1",
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                "matched_fragments": 1474,
                "total_fragments": 1475,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Oerskovia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_001692445.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Oerskovia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.35",
                "min_intra_species_ani": "97.89",
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Oerskovia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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            },
            {
                "accession": "GCF_016907365.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Oerskovia",
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                "mean_intra_species_ani": "N/A",
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            },
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                "accession": "GCF_005937995.2",
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                "num_clustered_genomes": 2,
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            },
            {
                "accession": "GCF_000718325.1",
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                "num_clustered_genomes": 4,
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        ]
    },
    "_bac2feature": {
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        "cell_length": null,
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        "bacillus_cell_shape": 1.0,
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    "_genome_taxon": [
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        "merdavium"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}