{
    "type": "genome",
    "identifier": "GCF_014836845.1",
    "organism": "Ureibacillus galli",
    "title": "Ureibacillus galli",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Quadram Institutte",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_014836845.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN15803242",
        "wgs_master": "JACSQA000000000.1",
        "refseq_category": "reference genome",
        "taxid": "2762222",
        "species_taxid": "2762222",
        "organism_name": "Ureibacillus galli",
        "infraspecific_name": "strain=Re31",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/09/30",
        "asm_name": "ASM1483684v1",
        "asm_submitter": "Quadram Institutte",
        "gbrs_paired_asm": "GCA_014836845.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/836/845/GCF_014836845.1_ASM1483684v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3726905",
        "genome_size_ungapped": "3726705",
        "gc_percent": "35.000000",
        "replicon_count": "0",
        "scaffold_count": "77",
        "contig_count": "77",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_014836845.1-RS_2024_11_18",
        "annotation_date": "2024-11-18",
        "total_gene_count": "3819",
        "protein_coding_gene_count": "3731",
        "non_coding_gene_count": "36",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-09-30",
    "dateModified": "2020-09-30",
    "datePublished": "2020-09-30",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Ureibacillus galli"
        ],
        "sample_taxid": [
            "2762222"
        ],
        "sample_host_organism": [
            "Gallus gallus"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "United Kingdom: Norwich"
        ],
        "sample_host_location_id": [],
        "data_size": "1.054 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 4.17,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3726905",
        "Number of Sequences": "77",
        "Longest Sequences (bp)": "341053",
        "N50 (bp)": "93814",
        "Gap Ratio (%)": "0.005366",
        "GCcontent (%)": "35.2",
        "Number of CDSs": "3842",
        "Average Protein Length": "273.6",
        "Coding Ratio (%)": "84.6",
        "Number of rRNAs": "1",
        "Number of tRNAs": "28",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Ureibacillus chungkukjangi",
                "strain": "strain=KACC 16626",
                "accession": "GCA_003217295.1",
                "taxid": 1202712,
                "species_taxid": 1202712,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.9514,
                "matched_fragments": 518,
                "total_fragments": 1204,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ureibacillus chungkukjangi",
                "strain": "strain=2RL32",
                "accession": "GCA_003049615.1",
                "taxid": 1202712,
                "species_taxid": 1202712,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.932,
                "matched_fragments": 529,
                "total_fragments": 1204,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ureibacillus sinduriensis",
                "strain": "strain=JCM 15800",
                "accession": "GCA_000772955.1",
                "taxid": 561440,
                "species_taxid": 561440,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.4521,
                "matched_fragments": 467,
                "total_fragments": 1204,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ureibacillus sinduriensis",
                "strain": "strain=JCM 15800",
                "accession": "GCA_002200845.1",
                "taxid": 561440,
                "species_taxid": 561440,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.4414,
                "matched_fragments": 468,
                "total_fragments": 1204,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lysinibacillus composti",
                "strain": "strain=MCCC 1A13240",
                "accession": "GCA_003856865.1",
                "taxid": 720633,
                "species_taxid": 720633,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.1457,
                "matched_fragments": 386,
                "total_fragments": 1204,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lysinibacillus composti",
                "strain": "strain=DSM 24785",
                "accession": "GCA_016908465.1",
                "taxid": 720633,
                "species_taxid": 720633,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.1341,
                "matched_fragments": 380,
                "total_fragments": 1204,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ureibacillus massiliensis",
                "strain": "strain=4400831",
                "accession": "GCA_002200855.1",
                "taxid": 292806,
                "species_taxid": 292806,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.9077,
                "matched_fragments": 345,
                "total_fragments": 1204,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ureibacillus massiliensis",
                "strain": "strain=CCUG 49529",
                "accession": "GCA_000772965.1",
                "taxid": 292806,
                "species_taxid": 292806,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.9077,
                "matched_fragments": 345,
                "total_fragments": 1204,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ureibacillus acetophenoni",
                "strain": "strain=JC23",
                "accession": "GCA_900220965.1",
                "taxid": 614649,
                "species_taxid": 614649,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.4753,
                "matched_fragments": 336,
                "total_fragments": 1204,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lysinibacillus agricola",
                "strain": "strain=FJAT-51161",
                "accession": "GCA_016638705.1",
                "taxid": 2590012,
                "species_taxid": 2590012,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.312,
                "matched_fragments": 213,
                "total_fragments": 1204,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lysinibacillus xylanilyticus",
                "strain": "strain=DSM 23493",
                "accession": "GCA_001183605.1",
                "taxid": 582475,
                "species_taxid": 582475,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.239,
                "matched_fragments": 212,
                "total_fragments": 1204,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lysinibacillus contaminans",
                "strain": "strain=DSM 25560",
                "accession": "GCA_001278945.1",
                "taxid": 1293441,
                "species_taxid": 1293441,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.5836,
                "matched_fragments": 176,
                "total_fragments": 1204,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 4.17,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_014836845.1",
                "gtdb_species": "s__Ureibacillus sp014836845",
                "ani": 100.0,
                "matched_fragments": 1202,
                "total_fragments": 1204,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_A;f__Planococcaceae;g__Ureibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_003711845.1",
                "gtdb_species": "s__Ureibacillus halotolerans",
                "ani": 90.5143,
                "matched_fragments": 988,
                "total_fragments": 1204,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_A;f__Planococcaceae;g__Ureibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003966145.1",
                "gtdb_species": "s__Ureibacillus telephonicus",
                "ani": 80.5243,
                "matched_fragments": 549,
                "total_fragments": 1204,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_A;f__Planococcaceae;g__Ureibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_005491425.1",
                "gtdb_species": "s__Ureibacillus sp005491425",
                "ani": 80.1729,
                "matched_fragments": 560,
                "total_fragments": 1204,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_A;f__Planococcaceae;g__Ureibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003217295.1",
                "gtdb_species": "s__Ureibacillus chungkukjangi",
                "ani": 79.9676,
                "matched_fragments": 516,
                "total_fragments": 1204,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_A;f__Planococcaceae;g__Ureibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.99",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_003628435.1",
                "gtdb_species": "s__Ureibacillus endophyticus",
                "ani": 79.7035,
                "matched_fragments": 457,
                "total_fragments": 1204,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_A;f__Planococcaceae;g__Ureibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000772955.1",
                "gtdb_species": "s__Ureibacillus sinduriensis",
                "ani": 79.4519,
                "matched_fragments": 467,
                "total_fragments": 1204,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_A;f__Planococcaceae;g__Ureibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_016908465.1",
                "gtdb_species": "s__Ureibacillus composti",
                "ani": 79.1385,
                "matched_fragments": 381,
                "total_fragments": 1204,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_A;f__Planococcaceae;g__Ureibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_006864135.1",
                "gtdb_species": "s__Lysinibacillus sp006864135",
                "ani": 78.1065,
                "matched_fragments": 217,
                "total_fragments": 1204,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_A;f__Planococcaceae;g__Lysinibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.97",
                "min_intra_species_ani": "95.97",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.133,
        "cell_length": 0.388,
        "doubling_h": null,
        "growth_tmp": 50.3,
        "optimum_tmp": 49.875,
        "optimum_ph": 7.5,
        "genome_size": 2846106.0,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 1.0,
        "sporulation": 1.0,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Ureibacillus",
        "galli"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}