{ "type": "genome", "identifier": "GCF_014836875.1", "organism": "Arthrobacter pullicola", "title": "Arthrobacter pullicola", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Quadram Institutte", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014836875.1", "bioproject": "PRJNA224116", "biosample": "SAMN15803244", "wgs_master": "JACSQC000000000.1", "refseq_category": "reference genome", "taxid": "2762224", "species_taxid": "2762224", "organism_name": "Arthrobacter pullicola", "infraspecific_name": "strain=Sa2BUA2", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/09/30", "asm_name": "ASM1483687v1", "asm_submitter": "Quadram Institutte", "gbrs_paired_asm": "GCA_014836875.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/836/875/GCF_014836875.1_ASM1483687v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3624836", "genome_size_ungapped": "3624396", "gc_percent": "66.000000", "replicon_count": "0", "scaffold_count": "15", "contig_count": "15", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014836875.1-RS_2024_11_18", "annotation_date": "2024-11-18", "total_gene_count": "3356", "protein_coding_gene_count": "3280", "non_coding_gene_count": "60", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-09-30", "dateModified": "2020-09-30", "datePublished": "2020-09-30", "_annotation": { "sample_count": 1, "sample_organism": [ "Arthrobacter pullicola" ], "sample_taxid": [ "2762224" ], "sample_host_organism": [ "Gallus gallus" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "United Kingdom: Norwich" ], "sample_host_location_id": [], "data_size": "1.007 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3624836", "Number of Sequences": "15", "Longest Sequences (bp)": "695631", "N50 (bp)": "559986", "Gap Ratio (%)": "0.012138", "GCcontent (%)": "65.8", "Number of CDSs": "3344", "Average Protein Length": "325.2", "Coding Ratio (%)": "90.0", "Number of rRNAs": "4", "Number of tRNAs": "57", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Arthrobacter pullicola", "strain": "strain=Sa2BUA2", "accession": "GCA_014836875.1", "taxid": 2762224, "species_taxid": 2762224, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1200, "total_fragments": 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"organism_name": "Arthrobacter citreus", "strain": "strain=DSM 20133", "accession": "GCA_009192745.1", "taxid": 1670, "species_taxid": 1670, "relation_to_type": "type", "validated": true, "ani": 82.4887, "matched_fragments": 765, "total_fragments": 1200, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter koreensis", "strain": "strain=DSM 16760", "accession": "GCA_009193255.1", "taxid": 199136, "species_taxid": 199136, "relation_to_type": "type", "validated": true, "ani": 82.1054, "matched_fragments": 802, "total_fragments": 1200, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter jiangjiafuii", "strain": "strain=zg-ZUI227", "accession": "GCA_018622995.1", "taxid": 2817475, "species_taxid": 2817475, "relation_to_type": "type", "validated": true, "ani": 80.5429, "matched_fragments": 598, "total_fragments": 1200, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter sunyaminii", "strain": 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"min_intra_species_ani": "98.39", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_015355785.1", "gtdb_species": "s__Arthrobacter_B gandavensis_A", "ani": 82.2167, "matched_fragments": 769, "total_fragments": 1200, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Arthrobacter_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009193255.1", "gtdb_species": "s__Arthrobacter_B koreensis", "ani": 82.1147, "matched_fragments": 801, "total_fragments": 1200, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Arthrobacter_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.08", "min_intra_species_ani": "99.08", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.97", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.105, "cell_length": 0.019, "doubling_h": null, "growth_tmp": 26.947, "optimum_tmp": 26.833, "optimum_ph": 7.7, "genome_size": 4207472.204, "gc_content": 64.7, "coding_genes": 3997.0, "rRNA16S_genes": 7.0, "tRNA_genes": 50.0, "gram_stain": 1.0, "sporulation": 0.0, "motility": 0.235, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.03, "aerobic_respiration": 0.969, "mesophilic_range_tmp": 0.8, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.2, "bacillus_cell_shape": 0.466, "coccus_cell_shape": 0.333, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.2, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Arthrobacter", "pullicola" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }