{ "type": "genome", "identifier": "GCF_014836955.1", "organism": "Bacillus norwichensis", "title": "Bacillus norwichensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Quadram Institutte", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014836955.1", "bioproject": "PRJNA224116", "biosample": "SAMN15803237", "wgs_master": "JACSPV000000000.1", "refseq_category": "reference genome", "taxid": "2762217", "species_taxid": "2762217", "organism_name": "Bacillus norwichensis", "infraspecific_name": "strain=Sa1BUA2", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/09/30", "asm_name": "ASM1483695v1", "asm_submitter": "Quadram Institutte", "gbrs_paired_asm": "GCA_014836955.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/836/955/GCF_014836955.1_ASM1483695v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4696597", "genome_size_ungapped": "4695297", "gc_percent": "40.000000", "replicon_count": "0", "scaffold_count": "114", "contig_count": "114", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014836955.1-RS_2024_11_18", "annotation_date": "2024-11-18", "total_gene_count": "4484", "protein_coding_gene_count": "4322", "non_coding_gene_count": "66", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-09-30", "dateModified": "2020-09-30", "datePublished": "2020-09-30", "_annotation": { "sample_count": 1, "sample_organism": [ "Bacillus norwichensis" ], "sample_taxid": [ "2762217" ], "sample_host_organism": [ "Gallus gallus" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "United Kingdom: Norwich" ], "sample_host_location_id": [], "data_size": "1.344 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4696597", "Number of Sequences": "114", "Longest Sequences (bp)": "277356", "N50 (bp)": "90313", "Gap Ratio (%)": "0.027680", "GCcontent (%)": "40.2", "Number of CDSs": "4454", "Average Protein Length": "287.0", "Coding Ratio (%)": "81.7", "Number of rRNAs": "2", "Number of tRNAs": "56", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Siminovitchia fortis", "strain": "strain=DSM 16012", "accession": "GCA_003605365.2", "taxid": 254758, "species_taxid": 254758, "relation_to_type": "type", "validated": true, "ani": 82.3661, "matched_fragments": 765, "total_fragments": 1509, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Siminovitchia fordii", "strain": "strain=DSM 16014", "accession": "GCA_000374565.1", "taxid": 254759, "species_taxid": 254759, "relation_to_type": "type", "validated": true, "ani": 82.1886, "matched_fragments": 905, "total_fragments": 1509, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Siminovitchia acidinfaciens", "strain": "strain=3-2-2", "accession": "GCA_003605385.2", "taxid": 2321395, "species_taxid": 2321395, "relation_to_type": "type", "validated": true, "ani": 79.9716, "matched_fragments": 662, "total_fragments": 1509, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus acidicola", "strain": "strain=FJAT-2406", "accession": "GCA_001636425.1", "taxid": 209389, "species_taxid": 209389, "relation_to_type": "type", "validated": true, "ani": 77.1881, "matched_fragments": 55, "total_fragments": 1509, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lederbergia panacisoli", "strain": "strain=KACC 17503", "accession": "GCA_024626525.1", "taxid": 1255251, "species_taxid": 1255251, "relation_to_type": "type", "validated": true, "ani": 77.0495, "matched_fragments": 93, "total_fragments": 1509, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Margalitia shackletonii", "strain": "strain=LMG 18435", "accession": "GCA_001420715.1", "taxid": 157838, "species_taxid": 157838, "relation_to_type": "type", "validated": true, "ani": 76.9986, "matched_fragments": 70, "total_fragments": 1509, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Weizmannia ginsengihumi", "strain": "strain=Gsoil 114", "accession": "GCA_011008565.1", "taxid": 363870, "species_taxid": 363870, "relation_to_type": "type", "validated": true, "ani": 76.9317, "matched_fragments": 53, "total_fragments": 1509, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Margalitia shackletonii", "strain": "strain=LMG 18435", "accession": "GCA_011008805.1", "taxid": 157838, "species_taxid": 157838, "relation_to_type": "type", "validated": true, "ani": 76.885, "matched_fragments": 69, "total_fragments": 1509, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cytobacillus praedii", "strain": "strain=FJAT-25547", "accession": "GCA_001439605.1", "taxid": 1742358, "species_taxid": 1742358, "relation_to_type": "type", "validated": true, "ani": 76.6576, "matched_fragments": 51, "total_fragments": 1509, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_014836955.1", "gtdb_species": "s__Siminovitchia sp014836955", "ani": 100.0, "matched_fragments": 1504, "total_fragments": 1509, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__Bacillaceae_C;g__Siminovitchia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_009928435.1", "gtdb_species": "s__Siminovitchia sp009928435", "ani": 92.9971, "matched_fragments": 978, "total_fragments": 1509, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__Bacillaceae_C;g__Siminovitchia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003605405.2", "gtdb_species": "s__Siminovitchia terrae", "ani": 90.3818, "matched_fragments": 1243, "total_fragments": 1509, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__Bacillaceae_C;g__Siminovitchia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.14", "min_intra_species_ani": "99.09", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.90", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_003605365.2", "gtdb_species": "s__Siminovitchia fortis", "ani": 82.3742, "matched_fragments": 765, "total_fragments": 1509, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__Bacillaceae_C;g__Siminovitchia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.09", "min_intra_species_ani": "98.04", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.87", "num_clustered_genomes": 16, "status": "-" }, { "accession": "GCF_000374565.1", "gtdb_species": "s__Siminovitchia fordii", "ani": 82.2054, "matched_fragments": 903, "total_fragments": 1509, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__Bacillaceae_C;g__Siminovitchia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.95", "min_intra_species_ani": "97.34", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.89", "num_clustered_genomes": 4, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.176, "cell_length": 0.387, "doubling_h": -0.134, "growth_tmp": 31.412, "optimum_tmp": 33.64, "optimum_ph": 7.746, "genome_size": 4544138.117, "gc_content": 40.577, "coding_genes": 4334.002, "rRNA16S_genes": 9.859, "tRNA_genes": 88.223, "gram_stain": 0.993, "sporulation": 0.975, "motility": 0.841, "range_salinity": 0.6, "facultative_respiration": 0.16, "anaerobic_respiration": 0.011, "aerobic_respiration": 0.827, "mesophilic_range_tmp": 0.928, "thermophilic_range_tmp": 0.053, "psychrophilic_range_tmp": 0.017, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Bacillus", "norwichensis" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }