{ "type": "genome", "identifier": "GCF_014836985.1", "organism": "Planococcus wigleyi", "title": "Planococcus wigleyi", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Quadram Institutte", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014836985.1", "bioproject": "PRJNA224116", "biosample": "SAMN15803236", "wgs_master": "JACSPU000000000.1", "refseq_category": "reference genome", "taxid": "2762216", "species_taxid": "2762216", "organism_name": "Planococcus wigleyi", "infraspecific_name": "strain=Sa1BUA13", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/09/30", "asm_name": "ASM1483698v1", "asm_submitter": "Quadram Institutte", "gbrs_paired_asm": "GCA_014836985.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/836/985/GCF_014836985.1_ASM1483698v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3752086", "genome_size_ungapped": "3751486", "gc_percent": "45.000000", "replicon_count": "0", "scaffold_count": "22", "contig_count": "22", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014836985.1-RS_2024_11_18", "annotation_date": "2024-11-18", "total_gene_count": "3774", "protein_coding_gene_count": "3689", "non_coding_gene_count": "58", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-09-30", "dateModified": "2020-09-30", "datePublished": "2020-09-30", "_annotation": { "sample_count": 1, "sample_organism": [ "Planococcus wigleyi" ], "sample_taxid": [ "2762216" ], "sample_host_organism": [ "Gallus gallus" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "United Kingdom: Norwich" ], "sample_host_location_id": [], "data_size": "1.066 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3752086", "Number of Sequences": "22", "Longest Sequences (bp)": "1146832", "N50 (bp)": "528455", "Gap Ratio (%)": "0.015991", "GCcontent (%)": "45.0", "Number of CDSs": "3744", "Average Protein Length": "290.2", "Coding Ratio (%)": "86.9", "Number of rRNAs": "3", "Number of tRNAs": "49", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Planococcus wigleyi", "strain": "strain=Sa1BUA13", "accession": "GCA_014836985.1", "taxid": 2762216, "species_taxid": 2762216, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1241, "total_fragments": 1241, 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"d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_A;f__Planococcaceae;g__Planococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.95", "min_intra_species_ani": "99.95", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.98", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.133, "cell_length": 0.056, "doubling_h": null, "growth_tmp": 27.636, "optimum_tmp": 26.937, "optimum_ph": 7.5, "genome_size": 3461599.112, "gc_content": 43.845, "coding_genes": 3296.062, "rRNA16S_genes": 9.375, "tRNA_genes": 72.125, "gram_stain": 1.0, "sporulation": 0.0, "motility": 0.8, "range_salinity": 1.0, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 0.666, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.333, "bacillus_cell_shape": 0.0, "coccus_cell_shape": 1.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 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