{ "type": "genome", "identifier": "GCF_014837145.1", "organism": "Chryseobacterium caseinilyticum", "title": "Chryseobacterium caseinilyticum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Dongguk University, Biomedi Campus", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014837145.1", "bioproject": "PRJNA224116", "biosample": "SAMN16095158", "wgs_master": "JACYFS000000000.1", "refseq_category": "reference genome", "taxid": "2771428", "species_taxid": "2771428", "organism_name": "Chryseobacterium caseinilyticum", "infraspecific_name": "strain=GCR10", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/09/30", "asm_name": "ASM1483714v1", "asm_submitter": "Dongguk University, Biomedi Campus", "gbrs_paired_asm": "GCA_014837145.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/837/145/GCF_014837145.1_ASM1483714v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4316129", "genome_size_ungapped": "4315840", "gc_percent": "36.500000", "replicon_count": "0", "scaffold_count": "25", "contig_count": "25", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014837145.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "4004", "protein_coding_gene_count": "3908", "non_coding_gene_count": "68", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-09-30", "dateModified": "2020-09-30", "datePublished": "2020-09-30", "_annotation": { "sample_count": 1, "sample_organism": [ "Chryseobacterium caseinilyticum" ], "sample_taxid": [ "2771428" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "1.207 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4316129", "Number of Sequences": "25", "Longest Sequences (bp)": "1667957", "N50 (bp)": "569507", "Gap Ratio (%)": "0.006696", "GCcontent (%)": "36.5", "Number of CDSs": "3890", "Average Protein Length": "319.5", "Coding Ratio (%)": "86.4", "Number of rRNAs": "4", "Number of tRNAs": "56", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Chryseobacterium caseinilyticum", "strain": "strain=GCR10", "accession": "GCA_014837145.1", "taxid": 2771428, "species_taxid": 2771428, 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566, "total_fragments": 1424, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium soldanellicola", "strain": "strain=DSM 17072", "accession": "GCA_900100115.1", "taxid": 311333, "species_taxid": 311333, "relation_to_type": "type", "validated": true, "ani": 79.4793, "matched_fragments": 577, "total_fragments": 1424, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium gambrini", "strain": "strain=DSM 18014", "accession": "GCA_900156825.1", "taxid": 373672, "species_taxid": 373672, "relation_to_type": "type", "validated": true, "ani": 79.4288, "matched_fragments": 569, "total_fragments": 1424, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium gwangjuense", "strain": "strain=THG-A18", "accession": "GCA_021311115.1", "taxid": 1069980, "species_taxid": 1069980, "relation_to_type": "type", "validated": true, "ani": 79.33, "matched_fragments": 520, "total_fragments": 1424, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium tagetis", "strain": "strain=RG1", "accession": "GCA_016735585.2", "taxid": 2801334, "species_taxid": 2801334, "relation_to_type": "type", "validated": true, "ani": 79.313, "matched_fragments": 575, "total_fragments": 1424, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium taihuense", "strain": "strain=CGMCC 1.10941", "accession": "GCA_900103755.1", "taxid": 1141221, "species_taxid": 1141221, "relation_to_type": "type", "validated": true, "ani": 79.262, "matched_fragments": 494, "total_fragments": 1424, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium daeguense", "strain": "strain=DSM 19388", "accession": "GCA_000430825.1", "taxid": 412438, "species_taxid": 412438, "relation_to_type": "type", "validated": true, "ani": 79.2013, "matched_fragments": 550, "total_fragments": 1424, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium ureilyticum", "strain": "strain=DSM 18017", "accession": "GCA_900156735.1", "taxid": 373668, "species_taxid": 373668, "relation_to_type": "type", "validated": true, "ani": 78.7827, "matched_fragments": 464, "total_fragments": 1424, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium artocarpi", "strain": "strain=UTM-3", "accession": "GCA_001684975.1", "taxid": 1414727, "species_taxid": 1414727, "relation_to_type": "type", "validated": true, "ani": 78.7154, "matched_fragments": 482, "total_fragments": 1424, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium lactis", "strain": "strain=NCTC11390", "accession": "GCA_002899875.1", "taxid": 1241981, "species_taxid": 1241981, "relation_to_type": "type", "validated": true, "ani": 78.7055, "matched_fragments": 471, "total_fragments": 1424, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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