{ "type": "genome", "identifier": "GCF_014841095.1", "organism": "Thauera sedimentorum", "title": "Thauera sedimentorum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Chung-Ang University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014841095.1", "bioproject": "PRJNA224116", "biosample": "SAMN16178374", "wgs_master": "JACYTO000000000.1", "refseq_category": "na", "taxid": "2767595", "species_taxid": "2767595", "organism_name": "Thauera sedimentorum", "infraspecific_name": "strain=CAU 1555", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/10/04", "asm_name": "ASM1484109v1", "asm_submitter": "Chung-Ang University", "gbrs_paired_asm": "GCA_014841095.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/841/095/GCF_014841095.1_ASM1484109v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3955289", "genome_size_ungapped": "3955194", "gc_percent": "68.000000", "replicon_count": "0", "scaffold_count": "4", "contig_count": "4", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014841095.1-RS_2024_06_17", "annotation_date": "2024-06-17", "total_gene_count": "3687", "protein_coding_gene_count": "3619", "non_coding_gene_count": "58", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-10-04", "dateModified": "2020-10-04", "datePublished": "2020-10-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Thauera sedimentorum" ], "sample_taxid": [ "2767595" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "1.070 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3955289", "Number of Sequences": "4", "Longest Sequences (bp)": "2121543", "N50 (bp)": "2121543", "Gap Ratio (%)": "0.002402", "GCcontent (%)": "68.0", "Number of CDSs": "3658", "Average Protein Length": "331.5", "Coding Ratio (%)": "92.0", "Number of rRNAs": "2", "Number of tRNAs": "52", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Azoarcus rhizosphaerae", "strain": "strain=CC-YHH848", "accession": "GCA_004801305.1", "taxid": 2565932, "species_taxid": 2565932, "relation_to_type": "type", "validated": true, "ani": 85.8781, "matched_fragments": 909, "total_fragments": 1316, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azoarcus nasutitermitis", "strain": "strain=CC-YHH838", "accession": "GCA_004801295.1", "taxid": 2565930, "species_taxid": 2565930, "relation_to_type": "type", "validated": true, "ani": 85.0516, "matched_fragments": 855, "total_fragments": 1316, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thauera hydrothermalis", "strain": "strain=GD-2", "accession": "GCA_003345255.1", "taxid": 2184083, "species_taxid": 2184083, "relation_to_type": "type", "validated": true, "ani": 84.9813, "matched_fragments": 806, "total_fragments": 1316, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thauera phenylacetica", "strain": "strain=B4P", "accession": "GCA_000310225.1", "taxid": 164400, "species_taxid": 164400, "relation_to_type": "type", "validated": true, "ani": 83.0862, "matched_fragments": 637, "total_fragments": 1316, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thauera aminoaromatica", "strain": "strain=S2", "accession": "GCA_000310185.1", "taxid": 164330, "species_taxid": 164330, "relation_to_type": "type", "validated": true, "ani": 82.9101, "matched_fragments": 649, "total_fragments": 1316, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thauera butanivorans", "strain": "strain=NBRC 103042", "accession": "GCA_001591165.1", "taxid": 86174, "species_taxid": 86174, "relation_to_type": "type", "validated": true, "ani": 82.0761, "matched_fragments": 676, "total_fragments": 1316, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thauera aromatica", "strain": "strain=K172", "accession": "GCA_003030465.1", "taxid": 59405, "species_taxid": 59405, "relation_to_type": "type", "validated": true, "ani": 82.0473, "matched_fragments": 601, "total_fragments": 1316, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thauera propionica", "strain": "strain=KNDSS-Mac4", "accession": "GCA_002245655.1", "taxid": 2019431, "species_taxid": 2019431, "relation_to_type": "type", "validated": true, "ani": 81.8514, "matched_fragments": 678, "total_fragments": 1316, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thauera linaloolentis", "strain": "strain=47Lol = DSM 12138", "accession": "GCA_000310205.1", "taxid": 76112, "species_taxid": 76112, "relation_to_type": "type", "validated": true, "ani": 81.7547, "matched_fragments": 634, "total_fragments": 1316, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thauera linaloolentis", "strain": "strain=DSM 12138", "accession": "GCA_000621305.1", "taxid": 76112, "species_taxid": 76112, "relation_to_type": "type", "validated": true, "ani": 81.5836, "matched_fragments": 661, "total_fragments": 1316, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aromatoleum toluolicum", "strain": "strain=T", "accession": "GCA_012911005.2", "taxid": 90060, "species_taxid": 90060, "relation_to_type": 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"matched_fragments": 518, "total_fragments": 1316, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nitrogeniibacter aestuarii", "strain": "strain=H1-1-2A", "accession": "GCA_017309585.1", "taxid": 2815343, "species_taxid": 2815343, "relation_to_type": "type", "validated": true, "ani": 78.6913, "matched_fragments": 431, "total_fragments": 1316, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_014489115.1", "gtdb_species": "s__Thauera_A sp014489115", "ani": 100.0, "matched_fragments": 1316, "total_fragments": 1316, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Rhodocyclaceae;g__Thauera_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, 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