{ "tc_result": [ { "organism_name": "Hoyosella lacisalsi", "strain": "strain=G463", "accession": "GCA_014841105.1", "taxid": 2742202, "species_taxid": 2742202, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1138, "total_fragments": 1139, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Hoyosella suaedae", "strain": "strain=LNNU 331112", "accession": "GCA_008312885.1", "taxid": 2605429, "species_taxid": 2605429, "relation_to_type": "type", "validated": true, "ani": 89.3509, "matched_fragments": 1029, "total_fragments": 1139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodococcus oryzae", "strain": "strain=NEAU-CX67", "accession": "GCA_005049235.1", "taxid": 2571143, "species_taxid": 2571143, "relation_to_type": "type", "validated": true, "ani": 78.0227, "matched_fragments": 349, "total_fragments": 1139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodococcus maanshanensis", "strain": "strain=DSM 44675", "accession": "GCA_900109405.1", "taxid": 183556, "species_taxid": 183556, "relation_to_type": "type", "validated": true, "ani": 77.9899, "matched_fragments": 373, "total_fragments": 1139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodococcus maanshanensis", "strain": "strain=NBRC 100610", "accession": "GCA_001894865.1", "taxid": 183556, "species_taxid": 183556, "relation_to_type": "type", "validated": true, "ani": 77.9816, "matched_fragments": 361, "total_fragments": 1139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodococcus rhodochrous", "strain": "strain=DSM 43241", "accession": "GCA_001646825.1", "taxid": 1829, "species_taxid": 1829, "relation_to_type": "suspected-type", "validated": true, "ani": 77.9216, "matched_fragments": 345, "total_fragments": 1139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodococcus rhodochrous", "strain": "strain=NCTC10210", "accession": "GCA_900187265.1", "taxid": 1829, "species_taxid": 1829, "relation_to_type": "suspected-type", "validated": true, "ani": 77.8855, "matched_fragments": 353, "total_fragments": 1139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prescottella equi", "strain": "strain=NCTC1621", "accession": "GCA_900455845.1", "taxid": 43767, "species_taxid": 43767, "relation_to_type": "type", "validated": true, "ani": 77.8566, "matched_fragments": 315, "total_fragments": 1139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prescottella equi", "strain": "strain=DSM 20307", "accession": "GCA_002094305.1", "taxid": 43767, "species_taxid": 43767, "relation_to_type": "type", "validated": true, "ani": 77.8521, "matched_fragments": 330, "total_fragments": 1139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia bhagyanarayanae", "strain": "strain=DSM 103495", "accession": "GCA_006716565.1", "taxid": 1215925, "species_taxid": 1215925, "relation_to_type": "type", "validated": true, "ani": 77.7491, "matched_fragments": 339, "total_fragments": 1139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia amikacinitolerans", "strain": "strain=NBRC 108937", "accession": "GCA_001612615.1", "taxid": 756689, "species_taxid": 756689, "relation_to_type": "type", "validated": true, "ani": 77.5639, "matched_fragments": 370, "total_fragments": 1139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hoyosella altamirensis", "strain": "strain=DSM 45258", "accession": "GCA_014191505.1", "taxid": 616997, "species_taxid": 616997, "relation_to_type": "type", "validated": true, "ani": 77.5627, "matched_fragments": 269, "total_fragments": 1139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia amikacinitolerans", "strain": "strain=DSM 45539", "accession": "GCA_024172045.1", "taxid": 756689, "species_taxid": 756689, "relation_to_type": "type", "validated": true, "ani": 77.5149, "matched_fragments": 377, "total_fragments": 1139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudonocardia bannensis", "strain": "strain=DSM 45300", "accession": "GCA_012911875.1", "taxid": 630973, "species_taxid": 630973, "relation_to_type": "type", "validated": true, "ani": 76.8801, "matched_fragments": 252, "total_fragments": 1139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudonocardia acidicola", "strain": "strain=K10HN5", "accession": "GCA_012911935.1", "taxid": 2724939, "species_taxid": 2724939, "relation_to_type": "type", "validated": true, "ani": 76.7039, "matched_fragments": 277, "total_fragments": 1139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces somaliensis", "strain": "strain=DSM 40738", "accession": "GCA_024349285.1", "taxid": 78355, "species_taxid": 78355, "relation_to_type": "type", "validated": true, "ani": 76.3883, "matched_fragments": 171, "total_fragments": 1139, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_014841105.1", "gtdb_species": "s__Hoyosella sp014841105", "ani": 100.0, "matched_fragments": 1138, "total_fragments": 1139, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Hoyosella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_008312885.1", "gtdb_species": "s__Hoyosella sp008312885", "ani": 89.3509, "matched_fragments": 1029, "total_fragments": 1139, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Hoyosella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_006704125.1", "gtdb_species": "s__Rhodococcus sp006704125", "ani": 78.0859, "matched_fragments": 333, "total_fragments": 1139, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Rhodococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_005049235.1", "gtdb_species": "s__Rhodococcus oryzae", "ani": 78.0281, "matched_fragments": 346, "total_fragments": 1139, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Rhodococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.56", 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"mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900187265.1", "gtdb_species": "s__Rhodococcus rhodochrous", "ani": 77.906, "matched_fragments": 349, "total_fragments": 1139, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Rhodococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.52", "min_intra_species_ani": "95.51", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.84", "num_clustered_genomes": 11, "status": "-" }, { "accession": "GCF_015477835.1", "gtdb_species": "s__Nocardia higoensis_A", "ani": 77.8747, "matched_fragments": 329, "total_fragments": 1139, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Nocardia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_006716565.1", "gtdb_species": "s__Nocardia bhagyanarayanae", "ani": 77.7353, "matched_fragments": 339, "total_fragments": 1139, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Nocardia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000738775.1", "gtdb_species": "s__Rhodococcus defluvii", "ani": 77.7072, "matched_fragments": 316, "total_fragments": 1139, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Rhodococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003051005.1", "gtdb_species": "s__Rhodococcus sp003051005", "ani": 77.6938, "matched_fragments": 312, "total_fragments": 1139, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Rhodococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000014565.1", "gtdb_species": "s__Rhodococcus jostii_A", "ani": 77.6538, "matched_fragments": 331, "total_fragments": 1139, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Rhodococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.76", "min_intra_species_ani": "95.96", "mean_intra_species_af": "0.81", "min_intra_species_af": "0.77", "num_clustered_genomes": 4, "status": 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"gtdb_species": "s__Pseudonocardia bannensis", "ani": 76.878, "matched_fragments": 251, "total_fragments": 1139, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Pseudonocardiaceae;g__Pseudonocardia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_012911935.1", "gtdb_species": "s__Pseudonocardia sp012911935", "ani": 76.718, "matched_fragments": 275, "total_fragments": 1139, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Pseudonocardiaceae;g__Pseudonocardia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017848795.1", "gtdb_species": "s__JAFIHG01 sp017848795", "ani": 76.2173, "matched_fragments": 124, "total_fragments": 1139, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Nanopelagicales;f__CAIYMF01;g__JAFIHG01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }