{ "type": "genome", "identifier": "GCF_014841135.1", "organism": "Paenibacillus arenosi", "title": "Paenibacillus arenosi", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Chung-Ang University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014841135.1", "bioproject": "PRJNA224116", "biosample": "SAMN16178373", "wgs_master": "JACYTN000000000.1", "refseq_category": "reference genome", "taxid": "2774142", "species_taxid": "2774142", "organism_name": "Paenibacillus arenosi", "infraspecific_name": "strain=CAU 1523", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/10/04", "asm_name": "ASM1484113v1", "asm_submitter": "Chung-Ang University", "gbrs_paired_asm": "GCA_014841135.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/841/135/GCF_014841135.1_ASM1484113v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5307553", "genome_size_ungapped": "5307369", "gc_percent": "43.500000", "replicon_count": "0", "scaffold_count": "57", "contig_count": "57", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014841135.1-RS_2024_03_23", "annotation_date": "2024-03-23", "total_gene_count": "4729", "protein_coding_gene_count": "4588", "non_coding_gene_count": "87", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-10-04", "dateModified": "2020-10-04", "datePublished": "2020-10-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Paenibacillus arenosi" ], "sample_taxid": [ "2774142" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "1.517 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5307553", "Number of Sequences": "57", "Longest Sequences (bp)": "680377", "N50 (bp)": "172680", "Gap Ratio (%)": "0.003467", "GCcontent (%)": "43.3", "Number of CDSs": "4732", "Average Protein Length": "319.2", "Coding Ratio (%)": "85.4", "Number of rRNAs": "2", "Number of tRNAs": "69", "Number of CRISPRs": "5" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Paenibacillus arenosi", "strain": "strain=CAU 1523", "accession": "GCA_014841135.1", "taxid": 2774142, "species_taxid": 2774142, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1735, "total_fragments": 1740, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Paenibacillus assamensis", "strain": "strain=DSM 18201", "accession": "GCA_000422445.1", "taxid": 311244, "species_taxid": 311244, "relation_to_type": "type", "validated": true, "ani": 93.4063, "matched_fragments": 1473, "total_fragments": 1740, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus thiaminolyticus", "strain": "strain=NRRL B-4156", "accession": "GCA_007066085.1", "taxid": 49283, "species_taxid": 49283, "relation_to_type": "type", "validated": true, "ani": 78.7843, "matched_fragments": 133, "total_fragments": 1740, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus aquistagni", "strain": "strain=11", "accession": "GCA_900177815.1", "taxid": 1852522, "species_taxid": 1852522, "relation_to_type": "type", "validated": true, "ani": 78.6399, "matched_fragments": 190, "total_fragments": 1740, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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"vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Paenibacillus", "arenosi" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }