{ "type": "genome", "identifier": "GCF_014841215.1", "organism": "Pseudomarimonas arenosa", "title": "Pseudomarimonas arenosa", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Chung-Ang University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014841215.1", "bioproject": "PRJNA224116", "biosample": "SAMN16178377", "wgs_master": "JACYTR000000000.1", "refseq_category": "reference genome", "taxid": "2774145", "species_taxid": "2774145", "organism_name": "Pseudomarimonas arenosa", "infraspecific_name": "strain=CAU 1598", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/10/04", "asm_name": "ASM1484121v1", "asm_submitter": "Chung-Ang University", "gbrs_paired_asm": "GCA_014841215.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/841/215/GCF_014841215.1_ASM1484121v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5494731", "genome_size_ungapped": "5494634", "gc_percent": "62.500000", "replicon_count": "0", "scaffold_count": "144", "contig_count": "144", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014841215.1-RS_2024_05_06", "annotation_date": "2024-05-06", "total_gene_count": "4330", "protein_coding_gene_count": "4231", "non_coding_gene_count": "54", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-10-04", "dateModified": "2020-10-04", "datePublished": "2020-10-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudomarimonas arenosa" ], "sample_taxid": [ "2774145" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "1.532 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5494731", "Number of Sequences": "144", "Longest Sequences (bp)": "256644", "N50 (bp)": "78176", "Gap Ratio (%)": "0.001765", "GCcontent (%)": "62.7", "Number of CDSs": "4326", "Average Protein Length": "368.1", "Coding Ratio (%)": "86.9", "Number of rRNAs": "2", "Number of tRNAs": "50", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudomarimonas arenosa", "strain": "strain=CAU 1598", "accession": "GCA_014841215.1", "taxid": 2774145, "species_taxid": 2774145, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1747, "total_fragments": 1754, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Arenimonas malthae", "strain": "strain=CC-JY-1", "accession": "GCA_000747075.1", "taxid": 354197, "species_taxid": 354197, "relation_to_type": "type", "validated": true, "ani": 77.5513, "matched_fragments": 301, "total_fragments": 1754, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas weifangensis", "strain": "strain=WF-2", "accession": "GCA_003416885.1", "taxid": 2303539, "species_taxid": 2303539, "relation_to_type": "type", "validated": true, "ani": 77.4675, "matched_fragments": 239, "total_fragments": 1754, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoxanthomonas suwonensis", "strain": "strain=DSM 17175", "accession": "GCA_010093235.1", "taxid": 314722, "species_taxid": 314722, "relation_to_type": "suspected-type", "validated": true, "ani": 77.427, "matched_fragments": 250, "total_fragments": 1754, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vulcaniibacterium tengchongense", "strain": "strain=DSM 25623", "accession": "GCA_003814555.1", "taxid": 1273429, "species_taxid": 1273429, "relation_to_type": "type", "validated": true, "ani": 77.4211, "matched_fragments": 275, "total_fragments": 1754, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vulcaniibacterium tengchongense", "strain": "strain=YIM 77520", "accession": "GCA_008033455.1", "taxid": 1273429, "species_taxid": 1273429, "relation_to_type": "type", "validated": true, "ani": 77.3903, "matched_fragments": 271, "total_fragments": 1754, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter luteus", "strain": "strain=CECT 30171", "accession": "GCA_907164845.1", "taxid": 2822368, "species_taxid": 2822368, "relation_to_type": "type", "validated": true, "ani": 77.3757, "matched_fragments": 200, "total_fragments": 1754, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoxanthomonas helianthi", "strain": "strain=110414", "accession": "GCA_017939625.1", "taxid": 1453541, "species_taxid": 1453541, "relation_to_type": "type", "validated": true, "ani": 77.3481, "matched_fragments": 244, "total_fragments": 1754, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter maris", "strain": "strain=KCTC 42381", "accession": "GCA_006546735.2", "taxid": 1605891, "species_taxid": 1605891, "relation_to_type": "type", "validated": true, "ani": 77.2492, "matched_fragments": 266, "total_fragments": 1754, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas lumbrici", "strain": "strain=1.1416", "accession": "GCA_006476065.1", "taxid": 2559601, "species_taxid": 2559601, "relation_to_type": "type", "validated": true, "ani": 77.2203, "matched_fragments": 213, "total_fragments": 1754, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Frateuria flava", "strain": "strain=MAH-13", "accession": "GCA_017837635.1", "taxid": 2821489, "species_taxid": 2821489, "relation_to_type": "type", "validated": true, "ani": 77.1805, "matched_fragments": 190, "total_fragments": 1754, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stenotrophomonas maltophilia", "strain": "strain=NBRC 14161", "accession": "GCA_001591205.1", "taxid": 40324, "species_taxid": 40324, "relation_to_type": "type", "validated": true, "ani": 77.1665, "matched_fragments": 244, "total_fragments": 1754, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas wenzhouensis", "strain": "strain=YD-1", "accession": "GCA_007859305.1", "taxid": 2599615, "species_taxid": 2599615, "relation_to_type": "type", "validated": true, "ani": 77.1642, "matched_fragments": 245, "total_fragments": 1754, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Fulvimonas soli", "strain": "strain=DSM 14263", "accession": "GCA_003148905.1", "taxid": 155197, "species_taxid": 155197, "relation_to_type": "type", "validated": true, "ani": 77.1625, "matched_fragments": 231, "total_fragments": 1754, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter enzymogenes", "strain": "strain=ATCC 29487", "accession": "GCA_900106525.1", "taxid": 69, "species_taxid": 69, "relation_to_type": "suspected-type", "validated": true, "ani": 77.1065, "matched_fragments": 332, "total_fragments": 1754, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodanobacter denitrificans", "strain": "strain=2APBS1", "accession": "GCA_000230695.3", "taxid": 666685, "species_taxid": 666685, "relation_to_type": "type", "validated": true, "ani": 77.0985, "matched_fragments": 223, "total_fragments": 1754, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter capsici", "strain": "strain=VKM B-2533", "accession": "GCA_014779555.2", "taxid": 435897, "species_taxid": 435897, "relation_to_type": "type", "validated": true, "ani": 77.0894, 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