{ "type": "genome", "identifier": "GCF_014842915.1", "organism": "Roseibium litorale", "title": "Roseibium litorale", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Guangdong Academy of Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014842915.1", "bioproject": "PRJNA224116", "biosample": "SAMN16287471", "wgs_master": "JACYXI000000000.1", "refseq_category": "reference genome", "taxid": "2803841", "species_taxid": "2803841", "organism_name": "Roseibium litorale", "infraspecific_name": "strain=4C16A", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/10/04", "asm_name": "ASM1484291v1", "asm_submitter": "Guangdong Academy of Sciences", "gbrs_paired_asm": "GCA_014842915.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/842/915/GCF_014842915.1_ASM1484291v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4943304", "genome_size_ungapped": "4943304", "gc_percent": "60.000000", "replicon_count": "0", "scaffold_count": "35", "contig_count": "35", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014842915.1-RS_2024_05_05", "annotation_date": "2024-05-05", "total_gene_count": "4579", "protein_coding_gene_count": "4473", "non_coding_gene_count": "52", "pubmed_id": "33433309" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-10-04", "dateModified": "2020-10-04", "datePublished": "2020-10-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Roseibium litorale" ], "sample_taxid": [ "2803841" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Guangdong" ], "sample_host_location_id": [], "data_size": "1.394 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4943304", "Number of Sequences": "35", "Longest Sequences (bp)": "824086", "N50 (bp)": "272196", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "59.8", "Number of CDSs": "4601", "Average Protein Length": "313.7", "Coding Ratio (%)": "87.6", "Number of rRNAs": "3", "Number of tRNAs": "47", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Roseibium litorale", "strain": "strain=4C16A", "accession": "GCA_014842915.1", "taxid": 2803841, "species_taxid": 2803841, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1629, "total_fragments": 1632, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Roseibium suaedae", "strain": "strain=DSM 22153", "accession": "GCA_900142725.1", "taxid": 735517, "species_taxid": 735517, "relation_to_type": "type", "validated": true, "ani": 86.3775, "matched_fragments": 1250, "total_fragments": 1632, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseibium aestuarii", "strain": "strain=SYSU M00256-3", "accession": "GCA_008477545.1", "taxid": 2600299, "species_taxid": 2600299, "relation_to_type": "type", "validated": true, "ani": 79.8762, "matched_fragments": 579, "total_fragments": 1632, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pannonibacter phragmitetus", "strain": "strain=NCTC13350", "accession": "GCA_900454465.1", "taxid": 121719, "species_taxid": 121719, "relation_to_type": "suspected-type", "validated": true, "ani": 79.2555, "matched_fragments": 555, "total_fragments": 1632, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pannonibacter phragmitetus", "strain": "strain=DSM 14782", "accession": "GCA_000382365.1", "taxid": 121719, "species_taxid": 121719, "relation_to_type": "suspected-type", "validated": true, "ani": 79.1893, "matched_fragments": 558, "total_fragments": 1632, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseibium aggregatum", "strain": "strain=IAM 12614", "accession": "GCA_000168975.1", "taxid": 187304, "species_taxid": 187304, "relation_to_type": "suspected-type", "validated": true, "ani": 79.0573, "matched_fragments": 538, "total_fragments": 1632, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseibium polysiphoniae", "strain": "strain=KACC 19711", "accession": "GCA_014842925.1", "taxid": 2571221, "species_taxid": 2571221, "relation_to_type": "type", "validated": true, "ani": 78.7598, "matched_fragments": 492, "total_fragments": 1632, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseibium limicola", "strain": "strain=CAU 1637", "accession": "GCA_017313085.1", "taxid": 2816037, "species_taxid": 2816037, "relation_to_type": "type", "validated": true, "ani": 78.4948, "matched_fragments": 403, "total_fragments": 1632, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseibium marinum", "strain": "strain=DSM 17023", "accession": "GCA_002906165.1", "taxid": 281252, "species_taxid": 281252, "relation_to_type": "type", "validated": true, "ani": 78.4518, "matched_fragments": 506, "total_fragments": 1632, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseibium alexandrii", "strain": "strain=DFL-11", "accession": "GCA_000158095.2", "taxid": 388408, "species_taxid": 388408, "relation_to_type": "type", "validated": true, "ani": 77.9233, "matched_fragments": 307, "total_fragments": 1632, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stappia albiluteola", "strain": "strain=F7233", "accession": "GCA_014050225.1", "taxid": 2758565, "species_taxid": 2758565, "relation_to_type": "type", "validated": true, "ani": 77.8081, "matched_fragments": 325, "total_fragments": 1632, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseibium aquae", "strain": "strain=CGMCC 1.12426", "accession": "GCA_014637575.1", "taxid": 1323746, "species_taxid": 1323746, "relation_to_type": "type", "validated": true, "ani": 77.5397, "matched_fragments": 322, "total_fragments": 1632, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oricola indica", "strain": "strain=JL-62", "accession": "GCA_019966595.1", "taxid": 2872591, "species_taxid": 2872591, "relation_to_type": "type", "validated": true, "ani": 77.1231, "matched_fragments": 185, "total_fragments": 1632, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium comanense", "strain": "strain=3P27G6", "accession": "GCA_005503535.1", "taxid": 2502215, "species_taxid": 2502215, "relation_to_type": "type", 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