{ "type": "genome", "identifier": "GCF_014842925.1", "organism": "Roseibium polysiphoniae", "title": "Roseibium polysiphoniae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Guangdong Academy of Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014842925.1", "bioproject": "PRJNA224116", "biosample": "SAMN16287473", "wgs_master": "JACYXJ000000000.1", "refseq_category": "reference genome", "taxid": "2571221", "species_taxid": "2571221", "organism_name": "Roseibium polysiphoniae", "infraspecific_name": "strain=KACC 19711", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/10/04", "asm_name": "ASM1484292v1", "asm_submitter": "Guangdong Academy of Sciences", "gbrs_paired_asm": "GCA_014842925.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/842/925/GCF_014842925.1_ASM1484292v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4582172", "genome_size_ungapped": "4582172", "gc_percent": "58.000000", "replicon_count": "0", "scaffold_count": "12", "contig_count": "12", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014842925.1-RS_2024_03_29", "annotation_date": "2024-03-29", "total_gene_count": "4294", "protein_coding_gene_count": "4218", "non_coding_gene_count": "51", "pubmed_id": "33433309" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-10-04", "dateModified": "2020-10-04", "datePublished": "2020-10-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Roseibium polysiphoniae" ], "sample_taxid": [ "2571221" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Japan: the Peter the Great Bay" ], "sample_host_location_id": [], "data_size": "1.295 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4582172", "Number of Sequences": "12", "Longest Sequences (bp)": "769485", "N50 (bp)": "594250", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "58.1", "Number of CDSs": "4337", "Average Protein Length": "312.4", "Coding Ratio (%)": "88.7", "Number of rRNAs": "3", "Number of tRNAs": "45", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Roseibium polysiphoniae", "strain": "strain=KACC 19711", "accession": "GCA_014842925.1", "taxid": 2571221, "species_taxid": 2571221, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1522, "total_fragments": 1522, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Roseibium suaedae", "strain": "strain=DSM 22153", "accession": "GCA_900142725.1", "taxid": 735517, "species_taxid": 735517, "relation_to_type": "type", "validated": true, "ani": 78.7999, "matched_fragments": 507, "total_fragments": 1522, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseibium litorale", "strain": "strain=4C16A", "accession": "GCA_014842915.1", "taxid": 2803841, "species_taxid": 2803841, "relation_to_type": "type", "validated": true, "ani": 78.7189, "matched_fragments": 509, "total_fragments": 1522, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseibium aestuarii", "strain": "strain=SYSU M00256-3", "accession": "GCA_008477545.1", "taxid": 2600299, "species_taxid": 2600299, "relation_to_type": "type", "validated": true, "ani": 78.5632, "matched_fragments": 482, "total_fragments": 1522, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseibium limicola", "strain": "strain=CAU 1637", "accession": "GCA_017313085.1", "taxid": 2816037, "species_taxid": 2816037, "relation_to_type": "type", "validated": true, "ani": 78.3544, "matched_fragments": 409, "total_fragments": 1522, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseibium marinum", "strain": "strain=DSM 17023", "accession": "GCA_002906165.1", "taxid": 281252, "species_taxid": 281252, "relation_to_type": "type", "validated": true, "ani": 78.0725, "matched_fragments": 417, "total_fragments": 1522, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseibium aggregatum", "strain": "strain=IAM 12614", "accession": "GCA_000168975.1", "taxid": 187304, "species_taxid": 187304, "relation_to_type": "suspected-type", "validated": true, "ani": 78.0714, "matched_fragments": 470, "total_fragments": 1522, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pannonibacter phragmitetus", "strain": "strain=NCTC13350", "accession": "GCA_900454465.1", "taxid": 121719, "species_taxid": 121719, "relation_to_type": "suspected-type", "validated": true, "ani": 77.8027, "matched_fragments": 368, "total_fragments": 1522, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pannonibacter phragmitetus", "strain": "strain=DSM 14782", "accession": "GCA_000382365.1", "taxid": 121719, "species_taxid": 121719, "relation_to_type": "suspected-type", "validated": true, "ani": 77.7189, "matched_fragments": 366, "total_fragments": 1522, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseibium album", "strain": "strain=CECT 5095", "accession": "GCA_001404515.1", "taxid": 311410, "species_taxid": 311410, "relation_to_type": "type", "validated": true, "ani": 77.6624, "matched_fragments": 305, "total_fragments": 1522, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stappia taiwanensis", "strain": 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1612173, "relation_to_type": "type", "validated": true, "ani": 75.5902, "matched_fragments": 59, "total_fragments": 1522, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_014842925.1", "gtdb_species": "s__Roseibium polysiphoniae", "ani": 100.0, "matched_fragments": 1522, "total_fragments": 1522, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Stappiaceae;g__Roseibium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.20", "min_intra_species_ani": "96.20", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_009650605.1", "gtdb_species": "s__Roseibium sp009650605", "ani": 92.9091, "matched_fragments": 1360, "total_fragments": 1522, "gtdb_taxonomy": 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