{
    "type": "genome",
    "identifier": "GCF_014850975.1",
    "organism": "Methylomonas fluvii",
    "title": "Methylomonas fluvii",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "GFZ German Research Centre for Geosciences",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_014850975.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMEA6807424",
        "wgs_master": "JACXST000000000.1",
        "refseq_category": "reference genome",
        "taxid": "1854564",
        "species_taxid": "1854564",
        "organism_name": "Methylomonas fluvii",
        "infraspecific_name": "strain=EbB",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/10/05",
        "asm_name": "ASM1485097v1",
        "asm_submitter": "GFZ German Research Centre for Geosciences",
        "gbrs_paired_asm": "GCA_014850975.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/850/975/GCF_014850975.1_ASM1485097v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "5589402",
        "genome_size_ungapped": "5589402",
        "gc_percent": "51.500000",
        "replicon_count": "0",
        "scaffold_count": "4",
        "contig_count": "4",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_014850975.1-RS_2024_08_24",
        "annotation_date": "2024-08-24",
        "total_gene_count": "5173",
        "protein_coding_gene_count": "5028",
        "non_coding_gene_count": "59",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-10-05",
    "dateModified": "2020-10-05",
    "datePublished": "2020-10-05",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Methylomonas fluvii"
        ],
        "sample_taxid": [
            "1854564"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Germany"
        ],
        "sample_host_location_id": [],
        "data_size": "1.584 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 97.4,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "5589402",
        "Number of Sequences": "4",
        "Longest Sequences (bp)": "2044869",
        "N50 (bp)": "1747170",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "51.5",
        "Number of CDSs": "5138",
        "Average Protein Length": "317.9",
        "Coding Ratio (%)": "87.7",
        "Number of rRNAs": "9",
        "Number of tRNAs": "47",
        "Number of CRISPRs": "3"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Methylomonas albis",
                "strain": "strain=EbA",
                "accession": "GCA_014850955.1",
                "taxid": 1854563,
                "species_taxid": 1854563,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.5721,
                "matched_fragments": 1228,
                "total_fragments": 1861,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methylomonas denitrificans",
                "strain": "strain=FJG1",
                "accession": "GCA_000785705.2",
                "taxid": 1538553,
                "species_taxid": 1538553,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.3773,
                "matched_fragments": 1277,
                "total_fragments": 1861,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methylomonas koyamae",
                "strain": "strain=Fw12E-Y",
                "accession": "GCA_019669905.1",
                "taxid": 702114,
                "species_taxid": 702114,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 80.5329,
                "matched_fragments": 756,
                "total_fragments": 1861,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methylomonas koyamae",
                "strain": "strain=JCM 16701",
                "accession": "GCA_001312005.1",
                "taxid": 702114,
                "species_taxid": 702114,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 80.4802,
                "matched_fragments": 685,
                "total_fragments": 1861,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methylomonas rhizoryzae",
                "strain": "strain=GJ1",
                "accession": "GCA_008632455.1",
                "taxid": 2608981,
                "species_taxid": 2608981,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.2916,
                "matched_fragments": 335,
                "total_fragments": 1861,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methylomicrobium lacus",
                "strain": "strain=LW14",
                "accession": "GCA_000527095.1",
                "taxid": 136992,
                "species_taxid": 136992,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.2888,
                "matched_fragments": 170,
                "total_fragments": 1861,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methylomarinum vadi",
                "strain": "strain=IT-4",
                "accession": "GCA_000733935.1",
                "taxid": 438855,
                "species_taxid": 438855,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.0062,
                "matched_fragments": 177,
                "total_fragments": 1861,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methylobacter marinus",
                "strain": "strain=A45",
                "accession": "GCA_000383855.1",
                "taxid": 34058,
                "species_taxid": 34058,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.8848,
                "matched_fragments": 157,
                "total_fragments": 1861,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 97.4,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_903064685.1",
                "gtdb_species": "s__Methylomonas sp903064685",
                "ani": 100.0,
                "matched_fragments": 1860,
                "total_fragments": 1861,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Methylococcales;f__Methylomonadaceae;g__Methylomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCF_016865255.1",
                "gtdb_species": "s__Methylomonas sp000702925",
                "ani": 91.6054,
                "matched_fragments": 1485,
                "total_fragments": 1861,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Methylococcales;f__Methylomonadaceae;g__Methylomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.47",
                "min_intra_species_ani": "95.82",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCF_000515215.1",
                "gtdb_species": "s__Methylomonas sp000515215",
                "ani": 89.163,
                "matched_fragments": 1382,
                "total_fragments": 1861,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Methylococcales;f__Methylomonadaceae;g__Methylomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.46",
                "min_intra_species_ani": "95.46",
                "mean_intra_species_af": "0.83",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_001644035.1",
                "gtdb_species": "s__Methylomonas methanica_A",
                "ani": 87.7392,
                "matched_fragments": 1306,
                "total_fragments": 1861,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Methylococcales;f__Methylomonadaceae;g__Methylomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.96",
                "min_intra_species_ani": "95.96",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_903064715.1",
                "gtdb_species": "s__Methylomonas sp903064715",
                "ani": 86.5833,
                "matched_fragments": 1230,
                "total_fragments": 1861,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Methylococcales;f__Methylomonadaceae;g__Methylomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_001644045.1",
                "gtdb_species": "s__Methylomonas methanica",
                "ani": 86.3834,
                "matched_fragments": 1233,
                "total_fragments": 1861,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Methylococcales;f__Methylomonadaceae;g__Methylomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.99",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 3,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": 0.096,
        "cell_length": 0.397,
        "doubling_h": 2.049,
        "growth_tmp": 24.525,
        "optimum_tmp": 27.5,
        "optimum_ph": 6.3,
        "genome_size": 5038439.884,
        "gc_content": 53.056,
        "coding_genes": 4476.333,
        "rRNA16S_genes": 3.0,
        "tRNA_genes": 47.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.666,
        "range_salinity": 0.0,
        "facultative_respiration": 0.25,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 0.75,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Methylomonas",
        "fluvii"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}